Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilV   Type   Machinery gene
Locus tag   ROT04_RS24745 Genome accession   NZ_CP135174
Coordinates   5281543..5282100 (+) Length   185 a.a.
NCBI ID   WP_003094697.1    Uniprot ID   A0A6N0KGD7
Organism   Pseudomonas aeruginosa strain PARM_L1     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 5276543..5287100
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ROT04_RS24725 (ROT04_24725) pilR 5277819..5279156 (+) 1338 WP_003094694.1 two-component system response regulator PilR Regulator
  ROT04_RS24730 (ROT04_24730) thiO 5279202..5280296 (-) 1095 WP_023098084.1 glycine oxidase ThiO -
  ROT04_RS24735 (ROT04_24735) - 5280431..5280940 (+) 510 WP_034014851.1 Tfp pilus assembly protein FimT/FimU -
  ROT04_RS24740 (ROT04_24740) - 5281046..5281552 (+) 507 WP_003094696.1 Tfp pilus assembly protein FimT/FimU -
  ROT04_RS24745 (ROT04_24745) pilV 5281543..5282100 (+) 558 WP_003094697.1 type 4a pilus minor pilin PilV Machinery gene
  ROT04_RS24750 (ROT04_24750) pilW 5282097..5282921 (+) 825 WP_003119422.1 type 4a pilus minor pilin PilW -
  ROT04_RS24755 (ROT04_24755) pilX 5282918..5283505 (+) 588 WP_003094700.1 type 4a pilus minor pilin PilX -
  ROT04_RS24760 (ROT04_24760) pilY1 5283517..5287002 (+) 3486 WP_058355286.1 type 4a pilus biogenesis protein PilY1 -

Sequence

Protein


Download         Length: 185 a.a.        Molecular weight: 20069.21 Da        Isoelectric Point: 8.2164

>NTDB_id=885912 ROT04_RS24745 WP_003094697.1 5281543..5282100(+) (pilV) [Pseudomonas aeruginosa strain PARM_L1]
MLLKSRHKPLYQSGFSMIEVLVALLLISIGVLGMIAMQGKTIQYTADSVERNKAAMLGSNLLESMRASPKALYDVKDQMA
TQSDFFKAKGSAFPTAPSSCTPLPDAIKDRLGCWAEQVKNELPGAGDLLKSDYYICRSSKPGDCDGKGSMLEIRLAWRGK
QGACVNAADSSADTSLCYYTLRVEP

Nucleotide


Download         Length: 558 bp        

>NTDB_id=885912 ROT04_RS24745 WP_003094697.1 5281543..5282100(+) (pilV) [Pseudomonas aeruginosa strain PARM_L1]
ATGCTATTGAAATCGCGGCACAAGCCGCTGTACCAGTCCGGCTTCAGCATGATCGAAGTGCTGGTCGCCCTGCTGCTGAT
CAGCATCGGCGTGCTGGGCATGATCGCCATGCAGGGCAAGACCATCCAGTACACCGCCGACTCGGTCGAGCGCAACAAGG
CAGCCATGCTCGGCAGCAACCTGCTGGAAAGCATGCGGGCGAGCCCGAAGGCGCTGTACGACGTCAAGGACCAGATGGCC
ACGCAATCCGACTTCTTCAAGGCCAAGGGGTCGGCGTTCCCCACCGCGCCGTCCTCCTGCACGCCATTGCCCGACGCGAT
CAAGGACCGCCTGGGATGCTGGGCGGAACAGGTGAAGAACGAACTGCCAGGCGCTGGCGACCTGCTGAAGAGCGACTACT
ACATCTGCCGCAGCTCGAAGCCGGGCGACTGCGACGGCAAGGGCTCCATGCTGGAAATCCGCCTGGCCTGGCGCGGCAAG
CAAGGCGCCTGCGTCAACGCCGCCGACAGCAGCGCCGACACCTCCCTCTGCTACTACACCCTCAGGGTCGAGCCATGA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(12-34)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A6N0KGD7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilV Pseudomonas aeruginosa PAK

97.838

100

0.978