Detailed information    

insolico Bioinformatically predicted

Overview

Name   exbB   Type   Machinery gene
Locus tag   ROT04_RS10285 Genome accession   NZ_CP135174
Coordinates   2191629..2192264 (+) Length   211 a.a.
NCBI ID   WP_003091163.1    Uniprot ID   A0A0H2ZBU7
Organism   Pseudomonas aeruginosa strain PARM_L1     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2186629..2197264
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ROT04_RS10270 (ROT04_10270) - 2187347..2188591 (+) 1245 WP_003105198.1 lipoprotein-releasing ABC transporter permease subunit -
  ROT04_RS10275 (ROT04_10275) - 2188667..2189200 (-) 534 WP_003091165.1 DUF2062 domain-containing protein -
  ROT04_RS10280 (ROT04_10280) comA 2189331..2191556 (+) 2226 WP_058355176.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  ROT04_RS10285 (ROT04_10285) exbB 2191629..2192264 (+) 636 WP_003091163.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  ROT04_RS10290 (ROT04_10290) - 2192261..2192701 (+) 441 WP_003091161.1 ExbD/TolR family protein -
  ROT04_RS10295 (ROT04_10295) lpxK 2192701..2193699 (+) 999 WP_003130692.1 tetraacyldisaccharide 4'-kinase -
  ROT04_RS10300 (ROT04_10300) - 2193737..2193922 (+) 186 WP_003091157.1 Trm112 family protein -
  ROT04_RS10305 (ROT04_10305) kdsB 2193922..2194686 (+) 765 WP_023517792.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  ROT04_RS10310 (ROT04_10310) - 2194686..2195150 (+) 465 WP_003091154.1 low molecular weight protein-tyrosine-phosphatase -
  ROT04_RS10315 (ROT04_10315) murB 2195147..2196166 (+) 1020 WP_003091153.1 UDP-N-acetylmuramate dehydrogenase -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 22890.06 Da        Isoelectric Point: 6.7278

>NTDB_id=885898 ROT04_RS10285 WP_003091163.1 2191629..2192264(+) (exbB) [Pseudomonas aeruginosa strain PARM_L1]
MWELVQAGGWMMLPIILSSIAATAIVAERLWTLRKSRVAPPELLGQVWKQIKGKQLSAQKLKDLRANSPLGEILAAGLAN
SKHGREIMKECIEEAASGVIHELERYLNALGTIAAMAPLLGLLGTVFGMIQIFGAFMDNGMANSPMLAAGISKALITTAA
GLLVAIPAVFFHRYLLRRVDELVIAMEQEAIKLVEVVQGDREVDYVEEGKA

Nucleotide


Download         Length: 636 bp        

>NTDB_id=885898 ROT04_RS10285 WP_003091163.1 2191629..2192264(+) (exbB) [Pseudomonas aeruginosa strain PARM_L1]
GTGTGGGAACTGGTTCAAGCCGGCGGCTGGATGATGCTGCCGATCATTCTGAGTTCGATCGCCGCCACCGCCATCGTCGC
GGAGCGCCTGTGGACGCTGCGCAAGAGCCGCGTCGCGCCGCCCGAGCTGCTCGGCCAGGTGTGGAAGCAGATCAAGGGCA
AGCAACTGAGCGCCCAGAAGCTCAAGGACCTGCGCGCCAACTCGCCGCTGGGAGAGATCCTCGCCGCCGGCCTGGCCAAC
TCCAAGCACGGTCGCGAGATCATGAAGGAGTGCATCGAGGAGGCTGCTTCCGGTGTCATCCACGAGCTGGAACGCTACCT
CAACGCCCTCGGCACCATCGCCGCGATGGCGCCGCTGCTGGGCCTGCTGGGCACGGTGTTCGGCATGATCCAGATCTTCG
GTGCCTTCATGGACAACGGCATGGCCAACTCGCCGATGCTCGCCGCGGGCATCTCCAAGGCATTGATCACCACCGCCGCC
GGCCTGCTGGTGGCGATTCCGGCGGTGTTCTTCCATCGCTACCTGCTGCGGCGGGTCGACGAACTGGTGATCGCCATGGA
GCAGGAGGCCATCAAGCTGGTGGAAGTGGTGCAGGGCGATCGTGAAGTCGACTACGTCGAGGAAGGCAAAGCGTGA

Domains

Predicted by InterproScan.

MotA/TolQ/ExbB proton channel family (MotA_ExbB)

(66-188)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0H2ZBU7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  exbB Pseudomonas stutzeri DSM 10701

81.043

100

0.81