Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilV   Type   Machinery gene
Locus tag   RQ453_RS16250 Genome accession   NZ_CP135173
Coordinates   3482734..3483291 (-) Length   185 a.a.
NCBI ID   WP_003110422.1    Uniprot ID   -
Organism   Pseudomonas aeruginosa strain CP-1     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3477734..3488291
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RQ453_RS16235 (RQ453_16235) pilY1 3477832..3481317 (-) 3486 WP_003134937.1 type 4a pilus biogenesis protein PilY1 -
  RQ453_RS16240 (RQ453_16240) pilX 3481329..3481916 (-) 588 WP_003094700.1 type 4a pilus minor pilin PilX -
  RQ453_RS16245 (RQ453_16245) pilW 3481913..3482737 (-) 825 WP_003119422.1 type 4a pilus minor pilin PilW -
  RQ453_RS16250 (RQ453_16250) pilV 3482734..3483291 (-) 558 WP_003110422.1 type 4a pilus minor pilin PilV Machinery gene
  RQ453_RS16255 (RQ453_16255) - 3483282..3483788 (-) 507 WP_023098086.1 Tfp pilus assembly protein FimT/FimU -
  RQ453_RS16260 (RQ453_16260) - 3483894..3484403 (-) 510 WP_003134932.1 Tfp pilus assembly protein FimT/FimU -
  RQ453_RS16265 (RQ453_16265) thiO 3484538..3485632 (+) 1095 WP_033995405.1 glycine oxidase ThiO -
  RQ453_RS16270 (RQ453_16270) pilR 3485678..3487015 (-) 1338 WP_003110427.1 two-component system response regulator PilR Regulator

Sequence

Protein


Download         Length: 185 a.a.        Molecular weight: 20072.23 Da        Isoelectric Point: 7.9204

>NTDB_id=885871 RQ453_RS16250 WP_003110422.1 3482734..3483291(-) (pilV) [Pseudomonas aeruginosa strain CP-1]
MLLKSRHKPLYQSGFSMIEVLVALLLISIGVLGMIAMQGKTIQYTADSVERNKAAMLGSNLLESMRASPKALYDVKDQMA
TQSDFFKAKGSAFPTAPSSCTPLPDAIKDRLGCWAEQVKNELPGAGDLLMSDYYICRSSKPGDCDGKGSMLEIRLAWRGK
QGACVNAADSSADTSLCYYTLRVEP

Nucleotide


Download         Length: 558 bp        

>NTDB_id=885871 RQ453_RS16250 WP_003110422.1 3482734..3483291(-) (pilV) [Pseudomonas aeruginosa strain CP-1]
ATGCTATTGAAATCGCGGCACAAGCCGCTGTACCAATCCGGCTTCAGCATGATCGAAGTGCTGGTCGCCCTGCTGCTGAT
CAGCATCGGCGTGCTGGGCATGATCGCCATGCAGGGCAAGACCATCCAGTACACCGCCGACTCGGTCGAGCGCAACAAGG
CAGCCATGCTCGGCAGCAACCTGCTGGAAAGCATGCGGGCGAGCCCGAAGGCGCTGTACGACGTCAAGGACCAGATGGCC
ACGCAATCCGACTTCTTCAAGGCCAAGGGGTCGGCGTTCCCCACCGCGCCGTCCTCCTGCACGCCATTGCCCGACGCGAT
CAAGGACCGCCTGGGATGCTGGGCGGAACAGGTGAAGAACGAACTGCCAGGCGCTGGCGACCTGCTGATGAGCGACTACT
ACATCTGCCGCAGCTCGAAGCCGGGCGACTGCGACGGCAAGGGCTCCATGCTGGAAATCCGCCTGGCCTGGCGCGGCAAG
CAAGGCGCCTGCGTCAACGCCGCCGACAGCAGCGCCGACACCTCCCTCTGCTACTACACCCTCAGGGTTGAGCCATGA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(12-34)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilV Pseudomonas aeruginosa PAK

98.378

100

0.984