Detailed information NTG0885791

Bioinformatically predicted

Overview

• Name: radA
• Type: Machinery gene
• Locus tag: BIV20_RS09960
• Genome accession: NZ_CP135164
• Coordinates: 2014687..2016054 (-)
• Length: 455 a.a.
• NCBI ID: WP_075720589.1
• Uniprot ID: -
• Organism: Roseburia sp. 499
• Function: homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 2009687..2021054

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
BIV20_RS09950 (BIV20_09955)	map	2013220..2013987 (-)	768	WP_083655176.1	type I methionyl aminopeptidase	-
BIV20_RS09955 (BIV20_09960)	deoC	2014005..2014670 (-)	666	WP_075720588.1	deoxyribose-phosphate aldolase	-
BIV20_RS09960 (BIV20_09965)	radA	2014687..2016054 (-)	1368	WP_075720589.1	DNA repair protein RadA	Machinery gene
BIV20_RS09965 (BIV20_09970)	-	2016136..2016552 (-)	417	WP_075720590.1	endosialidase	-
BIV20_RS09970 (BIV20_09975)	-	2016615..2019062 (-)	2448	WP_075720591.1	ATP-dependent Clp protease ATP-binding subunit	-
BIV20_RS09975 (BIV20_09980)	-	2019073..2019441 (-)	369	WP_075720592.1	GntR family transcriptional regulator	-

Sequence

Protein

• Length: 455 a.a.
• Molecular weight: 49536.27 Da
• Isoelectric Point: 6.1795

>NTDB_id=885791 BIV20_RS09960 WP_075720589.1 2014687..2016054(-) (radA) [Roseburia sp. 499]
MAKGKNVTVYFCQSCGYESSKWMGQCPGCKEWNTFVEETVEKKTAGKLKSVVGGNQDLKSYKLSEIDMQEKERMKTQFPE
LDRVLGGGIVPGSMILVGGDPGIGKSTLLLQVCRNLADAMSVLYISGEESLQQIKMRAQRIGNFSDNLQLLCETNLERIE
QVIERQKPSVVIIDSIQTMYNEEVSSAPGSVSQVRESTGRLMQIAKGMGVTVFIVGHVTKEGVVAGPRVLEHMVDTVLYF
EGDRHAAYRILRGVKNRFGSTNEIGVFEMCEEGLREVENPSEFMLNGKPEGASGSVVACSMEGTRPVLLEVQALVCHSSF
GIPRRTAAGTDLNRVNLLMAVLEKRAGLSMSNCDAYVNIAGGIRMSEPAIDLGIVMALASSFRDKPIDEKTICFGEVGLS
GEVRAVNMAQQRVTEARKLGFTACILPKVCVPTLTDTAGIKIIGVENIQEAIGRM

Nucleotide

• Length: 1368 bp

>NTDB_id=885791 BIV20_RS09960 WP_075720589.1 2014687..2016054(-) (radA) [Roseburia sp. 499]
ATGGCGAAGGGGAAGAATGTTACTGTATATTTTTGTCAATCTTGTGGATACGAATCATCCAAATGGATGGGGCAATGTCC
GGGGTGTAAAGAATGGAATACATTTGTAGAAGAAACCGTAGAGAAGAAGACTGCAGGAAAGCTGAAAAGTGTAGTAGGTG
GTAATCAGGATTTAAAGTCCTATAAATTGTCAGAGATTGATATGCAGGAAAAAGAACGGATGAAGACACAATTTCCGGAA
TTGGATCGGGTGTTAGGCGGTGGAATCGTTCCGGGGTCTATGATATTAGTAGGTGGTGATCCGGGAATTGGAAAGTCCAC
GCTCTTACTTCAGGTGTGCCGGAATCTTGCAGATGCCATGAGCGTTTTGTATATTTCAGGTGAGGAATCTTTACAACAGA
TAAAGATGCGTGCCCAGCGGATTGGAAACTTTTCTGATAATTTGCAGTTGTTGTGTGAAACCAATTTAGAACGGATAGAA
CAAGTGATTGAGCGGCAGAAACCAAGTGTGGTAATCATCGACTCCATTCAGACTATGTATAACGAAGAAGTAAGTTCTGC
TCCGGGTAGTGTTTCACAGGTAAGAGAATCTACCGGACGTTTGATGCAGATTGCAAAGGGAATGGGGGTTACGGTGTTTA
TTGTAGGCCATGTTACGAAGGAAGGAGTAGTAGCAGGTCCCCGTGTGTTAGAACATATGGTAGATACGGTACTCTATTTT
GAGGGAGACCGCCATGCAGCCTATCGTATATTACGCGGAGTAAAGAATCGTTTTGGTTCTACCAATGAAATTGGTGTATT
TGAGATGTGTGAAGAGGGATTACGGGAAGTAGAAAATCCGTCAGAATTTATGCTAAATGGGAAGCCGGAAGGAGCTTCTG
GTTCTGTTGTGGCATGCTCTATGGAAGGTACTCGTCCGGTGCTGTTGGAGGTACAGGCGTTGGTGTGTCACAGTAGTTTT
GGGATTCCACGAAGGACCGCTGCGGGAACGGACTTAAATCGTGTAAACCTTTTGATGGCAGTTTTGGAAAAAAGGGCAGG
GCTTTCTATGTCAAATTGTGATGCTTATGTTAATATTGCAGGAGGTATCCGTATGAGTGAGCCTGCAATTGATTTGGGAA
TTGTTATGGCACTTGCTTCCAGTTTTCGGGATAAGCCTATTGATGAAAAAACTATTTGTTTTGGCGAAGTAGGTTTAAGT
GGAGAAGTTCGTGCTGTAAATATGGCGCAACAGCGAGTGACAGAGGCACGAAAATTAGGATTTACAGCGTGTATTTTGCC
TAAAGTATGCGTACCGACACTTACAGATACTGCTGGGATAAAAATCATTGGTGTAGAAAATATACAAGAAGCGATTGGCA
GAATGTAA

Domains

Predicted by InterproScan.

• Subunit ChlI of Mg-chelatase (ChlI) (346-428)

• AAA domain (AAA_25) (72-222)

• Rubredoxin metal binding domain (Zn_ribbon_LapB) (10-37)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
radA	Bacillus subtilis subsp. subtilis str. 168	57.489	99.78	0.574
radA	Streptococcus mitis NCTC 12261	53.407	100	0.534
radA	Streptococcus mitis SK321	53.407	100	0.534
radA	Streptococcus pneumoniae Rx1	53.407	100	0.534
radA	Streptococcus pneumoniae D39	53.407	100	0.534
radA	Streptococcus pneumoniae R6	53.407	100	0.534
radA	Streptococcus pneumoniae TIGR4	53.407	100	0.534