Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilA   Type   Machinery gene
Locus tag   BIV16_RS03405 Genome accession   NZ_CP135162
Coordinates   762855..763796 (+) Length   313 a.a.
NCBI ID   WP_075679341.1    Uniprot ID   -
Organism   Roseburia sp. 831b     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 757855..768796
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BIV16_RS03390 (BIV16_03415) acpP 758128..758361 (+) 234 WP_075679343.1 acyl carrier protein -
  BIV16_RS03395 (BIV16_03420) rnc 758495..759184 (+) 690 WP_075679745.1 ribonuclease III -
  BIV16_RS03400 (BIV16_03425) smc 759208..762768 (+) 3561 WP_075679342.1 chromosome segregation protein SMC -
  BIV16_RS03405 (BIV16_03430) pilA 762855..763796 (+) 942 WP_075679341.1 signal recognition particle-docking protein FtsY Machinery gene
  BIV16_RS03410 (BIV16_03435) ilvA 763854..765065 (+) 1212 WP_075679340.1 threonine ammonia-lyase -
  BIV16_RS03415 (BIV16_03440) - 765084..765446 (+) 363 WP_075679339.1 hypothetical protein -
  BIV16_RS03420 (BIV16_03445) - 765518..765862 (+) 345 WP_075679338.1 YlxM family DNA-binding protein -
  BIV16_RS03425 (BIV16_03450) ffh 765864..767213 (+) 1350 WP_075679337.1 signal recognition particle protein -
  BIV16_RS03430 (BIV16_03455) rpsP 767249..767494 (+) 246 WP_075679336.1 30S ribosomal protein S16 -
  BIV16_RS03435 (BIV16_03460) - 767513..767743 (+) 231 WP_075679335.1 KH domain-containing protein -

Sequence

Protein


Download         Length: 313 a.a.        Molecular weight: 33880.55 Da        Isoelectric Point: 4.5479

>NTDB_id=885768 BIV16_RS03405 WP_075679341.1 762855..763796(+) (pilA) [Roseburia sp. 831b]
MAEEKKGFWSRLVSGLSKTRDNIVSGIDSIFSGFSSIDDDFYEEIEEILIMGDLGVRATEAIIEDLKQKVKEQKIKEPSA
CKQLLIDSIKEQMNVGETAYRFENEKSVVLVIGVNGVGKTTSVGKLAGKLKDQGKKVVLAAADTFRAAAGSQLSEWANRA
GVEMIGGQDGADPAAVIFDAVAAAKARNADVLLCDTAGRLHNKKNLMEELKKINRILEKEYPDAYRETLVVLDATTGQNA
LAQAKEFSECAQITGIILTKMDGTAKGGIAVAIHSELGIPVKYIGVGETIDDLQKFDADEFVNALFETEEQEA

Nucleotide


Download         Length: 942 bp        

>NTDB_id=885768 BIV16_RS03405 WP_075679341.1 762855..763796(+) (pilA) [Roseburia sp. 831b]
ATGGCTGAAGAAAAGAAAGGCTTCTGGAGCCGCCTGGTATCCGGGTTAAGCAAGACAAGAGATAACATCGTTTCTGGAAT
CGATTCCATTTTTAGTGGATTTTCCAGTATTGATGATGATTTCTATGAAGAGATTGAAGAAATTTTAATTATGGGAGATC
TTGGGGTACGTGCAACGGAAGCAATCATAGAAGATCTGAAACAGAAAGTAAAAGAGCAGAAAATCAAGGAGCCAAGTGCA
TGTAAGCAGCTTTTGATTGACAGTATCAAGGAGCAGATGAATGTCGGCGAGACGGCATACCGTTTTGAAAATGAGAAATC
CGTCGTACTTGTCATCGGTGTAAACGGCGTTGGTAAAACTACATCCGTAGGTAAATTGGCCGGCAAACTGAAAGATCAGG
GCAAAAAAGTGGTTCTTGCAGCGGCAGATACCTTCCGTGCAGCAGCGGGAAGCCAGCTGTCCGAGTGGGCAAACCGTGCC
GGAGTGGAGATGATTGGCGGACAGGATGGAGCAGATCCTGCGGCCGTAATTTTTGATGCAGTTGCAGCTGCAAAGGCAAG
AAACGCAGATGTTTTGTTGTGTGATACGGCAGGAAGACTCCACAATAAAAAGAATCTGATGGAAGAGTTAAAAAAGATTA
ACCGTATTTTAGAGAAAGAATATCCAGATGCCTATCGTGAGACACTTGTCGTGTTGGATGCGACAACCGGACAGAATGCG
TTGGCACAGGCGAAGGAATTTTCCGAGTGTGCGCAGATTACCGGAATTATCTTAACCAAGATGGATGGTACAGCAAAGGG
TGGTATCGCAGTTGCGATTCATTCAGAGCTTGGAATTCCGGTGAAATACATTGGAGTGGGCGAGACAATTGATGATTTGC
AGAAATTCGATGCAGATGAATTTGTAAATGCCTTATTCGAGACAGAAGAACAGGAAGCATAG

Domains

Predicted by InterproScan.

SRP54-type protein, GTPase domain (SRP54)

(107-306)

SRP54-type protein, helical bundle domain (SRP54_N)

(25-88)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilA Neisseria gonorrhoeae MS11

48.397

99.681

0.482