Detailed information    

insolico Bioinformatically predicted

Overview

Name   hns   Type   Regulator
Locus tag   RQL82_RS16675 Genome accession   NZ_CP135159
Coordinates   3524297..3524623 (-) Length   108 a.a.
NCBI ID   WP_000801427.1    Uniprot ID   N9J3X5
Organism   Acinetobacter pittii strain AR3651     
Function   repress the expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 3519297..3529623
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RQL82_RS16655 (RQL82_16720) - 3519403..3520029 (-) 627 WP_284091675.1 FHA domain-containing protein -
  RQL82_RS16660 (RQL82_16725) gspD 3520071..3522341 (-) 2271 WP_069036353.1 type II secretion system secretin GspD -
  RQL82_RS16665 (RQL82_16730) - 3522383..3523219 (-) 837 WP_005079413.1 type II secretion system protein N -
  RQL82_RS16670 (RQL82_16735) gspN 3523219..3523962 (-) 744 WP_002121195.1 type II secretion system protein N -
  RQL82_RS16675 (RQL82_16740) hns 3524297..3524623 (-) 327 WP_000801427.1 H-NS family nucleoid-associated regulatory protein Regulator
  RQL82_RS16680 (RQL82_16745) - 3524818..3525258 (-) 441 WP_002121251.1 acyl-CoA thioesterase -
  RQL82_RS16685 (RQL82_16750) - 3525266..3526459 (-) 1194 WP_017385883.1 membrane protein -
  RQL82_RS16690 (RQL82_16755) - 3526469..3527311 (-) 843 WP_329759937.1 hypothetical protein -
  RQL82_RS16695 (RQL82_16760) hemD 3527320..3528087 (-) 768 WP_238517335.1 uroporphyrinogen-III synthase -
  RQL82_RS16700 (RQL82_16765) hemC 3528091..3529008 (-) 918 WP_206261936.1 hydroxymethylbilane synthase -

Sequence

Protein


Download         Length: 108 a.a.        Molecular weight: 12462.12 Da        Isoelectric Point: 5.0524

>NTDB_id=885756 RQL82_RS16675 WP_000801427.1 3524297..3524623(-) (hns) [Acinetobacter pittii strain AR3651]
MKPDISELSVEELKRLQEEAEALIASKKDQAIEDAYNQIIEIAENVGFSVEQLLEFGAQKRKKTTRKSVEPRYRNKNNAE
ETWTGRGKQPRWLVAEIEKGAKLEDFLI

Nucleotide


Download         Length: 327 bp        

>NTDB_id=885756 RQL82_RS16675 WP_000801427.1 3524297..3524623(-) (hns) [Acinetobacter pittii strain AR3651]
ATGAAACCGGATATCAGTGAATTATCTGTTGAAGAGTTAAAACGCTTACAAGAAGAAGCAGAAGCTTTAATTGCAAGTAA
AAAAGATCAAGCAATCGAAGATGCTTATAATCAAATTATCGAGATTGCTGAAAATGTAGGTTTCAGTGTTGAACAACTTC
TTGAGTTTGGTGCTCAAAAACGTAAGAAAACAACTCGTAAATCTGTTGAGCCTCGTTACCGCAACAAAAACAATGCTGAA
GAGACTTGGACTGGTCGCGGTAAACAACCACGCTGGTTAGTTGCTGAAATTGAAAAAGGCGCAAAACTTGAAGATTTCTT
AATCTAA

Domains

Predicted by InterproScan.

H-NS histone family (Histone_HNS)

(12-102)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB N9J3X5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  hns Acinetobacter baumannii strain A118

100

100

1