Detailed information    

insolico Bioinformatically predicted

Overview

Name   xcpV   Type   Machinery gene
Locus tag   RQL82_RS09785 Genome accession   NZ_CP135159
Coordinates   2074556..2074936 (-) Length   126 a.a.
NCBI ID   WP_064784081.1    Uniprot ID   A0A345WBK2
Organism   Acinetobacter pittii strain AR3651     
Function   pseudopilus assembly (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2069556..2079936
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RQL82_RS09755 (RQL82_09795) tadA 2069619..2070122 (-) 504 WP_002121378.1 tRNA adenosine(34) deaminase TadA -
  RQL82_RS09760 (RQL82_09800) hibch 2070128..2071252 (-) 1125 WP_206260669.1 enoyl-CoA hydratase/isomerase family protein -
  RQL82_RS09765 (RQL82_09805) ung 2071249..2071962 (-) 714 WP_060465735.1 uracil-DNA glycosylase -
  RQL82_RS09770 (RQL82_09810) - 2072016..2072612 (-) 597 WP_060465736.1 6-pyruvoyl trahydropterin synthase family protein -
  RQL82_RS09775 (RQL82_09815) gspK 2072841..2073800 (-) 960 WP_284090788.1 type II secretion system minor pseudopilin GspK -
  RQL82_RS09780 (RQL82_09820) xcpW 2073801..2074556 (-) 756 WP_284090787.1 type II secretion system minor pseudopilin GspJ Machinery gene
  RQL82_RS09785 (RQL82_09825) xcpV 2074556..2074936 (-) 381 WP_064784081.1 type II secretion system minor pseudopilin GspI Machinery gene
  RQL82_RS09790 (RQL82_09830) - 2074926..2075480 (-) 555 WP_060465739.1 type II secretion system protein -
  RQL82_RS09795 (RQL82_09835) - 2075487..2076095 (-) 609 WP_005069536.1 TetR/AcrR family transcriptional regulator -
  RQL82_RS09800 (RQL82_09840) ycfH 2076132..2076905 (-) 774 WP_060465740.1 TatD family hydrolase -
  RQL82_RS09805 (RQL82_09845) pilZ 2076923..2077264 (-) 342 WP_002121335.1 PilZ domain-containing protein -
  RQL82_RS09810 (RQL82_09850) holB 2077275..2078255 (-) 981 WP_060465741.1 DNA polymerase III subunit delta' -
  RQL82_RS09815 (RQL82_09855) kdsB 2078269..2079030 (-) 762 WP_284090786.1 3-deoxy-manno-octulosonate cytidylyltransferase -

Sequence

Protein


Download         Length: 126 a.a.        Molecular weight: 13990.20 Da        Isoelectric Point: 9.4463

>NTDB_id=885740 RQL82_RS09785 WP_064784081.1 2074556..2074936(-) (xcpV) [Acinetobacter pittii strain AR3651]
MKSKGFTLLEVMVALAIFAVAAVALTKVAMQYTQSTSNAILRTKAQFVAMNEIALMEINQEWLEGTQSKQITSQGETWQI
DKSAQSTISPNVQKVDLQISLYDSDKGKVQNGITHLVFFNYPMKAK

Nucleotide


Download         Length: 381 bp        

>NTDB_id=885740 RQL82_RS09785 WP_064784081.1 2074556..2074936(-) (xcpV) [Acinetobacter pittii strain AR3651]
ATGAAATCTAAAGGCTTTACTCTATTAGAAGTAATGGTTGCTTTAGCAATTTTTGCAGTGGCGGCTGTCGCGTTAACTAA
AGTAGCCATGCAATATACTCAATCTACCTCAAATGCAATTCTTAGAACAAAAGCTCAGTTTGTAGCAATGAATGAAATTG
CTTTAATGGAGATAAATCAGGAATGGCTTGAAGGTACTCAAAGTAAGCAAATTACTTCTCAAGGCGAAACTTGGCAGATT
GACAAATCTGCACAATCTACAATTAGCCCGAATGTTCAGAAAGTAGATTTACAAATTAGCTTATATGATTCTGATAAGGG
CAAAGTTCAAAATGGTATTACTCACTTGGTATTTTTTAATTATCCAATGAAAGCAAAATAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(2-25)

Type II secretion system (T2SS), protein I (T2SSI)

(42-101)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A345WBK2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  xcpV Acinetobacter baumannii D1279779

92.857

100

0.929