Detailed information    

insolico Bioinformatically predicted

Overview

Name   fimU   Type   Machinery gene
Locus tag   RQL83_RS01835 Genome accession   NZ_CP135151
Coordinates   385747..386220 (+) Length   157 a.a.
NCBI ID   WP_016802756.1    Uniprot ID   A0A1C2SAU9
Organism   Acinetobacter pittii strain AR3676     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 380747..391220
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RQL83_RS01810 (RQL83_01815) spoT 381209..383314 (-) 2106 WP_002116807.1 RelA/SpoT family protein -
  RQL83_RS01815 (RQL83_01820) - 383330..383485 (-) 156 Protein_350 hypothetical protein -
  RQL83_RS01820 (RQL83_01825) rpoZ 383524..383802 (-) 279 WP_002116990.1 DNA-directed RNA polymerase subunit omega -
  RQL83_RS01825 (RQL83_01830) gmk 383875..384504 (-) 630 WP_002116973.1 guanylate kinase -
  RQL83_RS01830 (RQL83_01835) ispH 384627..385577 (+) 951 WP_002116992.1 4-hydroxy-3-methylbut-2-enyl diphosphate reductase -
  RQL83_RS01835 (RQL83_01840) fimU 385747..386220 (+) 474 WP_016802756.1 pilus assembly FimT family protein Machinery gene
  RQL83_RS01840 (RQL83_01845) pilV 386214..386774 (+) 561 WP_080564113.1 type IV pilus modification protein PilV Machinery gene
  RQL83_RS01845 (RQL83_01850) pilW 386774..387775 (+) 1002 WP_106389223.1 PilW family protein Machinery gene
  RQL83_RS01850 (RQL83_01855) pilX 387772..388581 (+) 810 WP_002117088.1 PilX N-terminal domain-containing pilus assembly protein Machinery gene

Sequence

Protein


Download         Length: 157 a.a.        Molecular weight: 16939.62 Da        Isoelectric Point: 7.7942

>NTDB_id=885676 RQL83_RS01835 WP_016802756.1 385747..386220(+) (fimU) [Acinetobacter pittii strain AR3676]
MRGIIPQDGFTLVELMVTIAVMAIIAMMAAPSMSNLLESKRLDGNQRDLINTLSEAKNQAILGRQDVSINLNSTALNTPT
SLNWKADSNNSLELKNIAADGTQSSLTATTLTFNANGVITNITQDTLLSICNSKINKKKILILTKLGTLIFKAEETC

Nucleotide


Download         Length: 474 bp        

>NTDB_id=885676 RQL83_RS01835 WP_016802756.1 385747..386220(+) (fimU) [Acinetobacter pittii strain AR3676]
ATGAGGGGAATTATTCCGCAAGACGGGTTCACCTTGGTTGAGCTTATGGTGACGATTGCGGTCATGGCTATTATCGCGAT
GATGGCTGCACCATCTATGTCGAATTTATTAGAAAGCAAACGACTAGATGGAAACCAACGAGATCTAATCAATACTTTAT
CGGAAGCAAAGAACCAAGCCATACTTGGTCGACAAGATGTATCCATTAATCTGAATTCAACAGCTTTAAATACTCCCACT
TCCTTGAATTGGAAAGCTGATTCCAATAACAGTCTTGAGCTTAAAAATATCGCTGCTGATGGTACGCAGAGTTCATTAAC
AGCAACGACTCTAACTTTTAATGCGAATGGGGTGATAACCAATATTACCCAAGATACACTTTTATCTATTTGTAATTCAA
AAATAAATAAAAAGAAAATTCTTATTTTAACAAAGCTTGGCACATTAATTTTTAAAGCTGAGGAGACATGTTAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(7-29)

Type II transport protein GspH (GspH)

(47-135)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1C2SAU9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  fimU Acinetobacter baumannii D1279779

87.898

100

0.879