Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   RN333_RS13435 Genome accession   NZ_CP135147
Coordinates   2775547..2776176 (-) Length   209 a.a.
NCBI ID   WP_314120805.1    Uniprot ID   -
Organism   Enterobacter kobei strain DW108     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 2770547..2781176
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RN333_RS13420 (RN333_13420) helD 2770794..2772848 (-) 2055 WP_314113279.1 DNA helicase IV -
  RN333_RS13425 (RN333_13425) - 2772971..2773417 (+) 447 WP_088219726.1 YccF domain-containing protein -
  RN333_RS13430 (RN333_13430) yccS 2773436..2775562 (+) 2127 WP_314113281.1 YccS family putative transporter -
  RN333_RS13435 (RN333_13435) sxy/tfoX 2775547..2776176 (-) 630 WP_314120805.1 TfoX/Sxy family DNA transformation protein Regulator
  RN333_RS13440 (RN333_13440) sulA 2776395..2776904 (+) 510 WP_088219729.1 SOS-induced cell division inhibitor SulA -
  RN333_RS13445 (RN333_13445) ompA 2777259..2778317 (+) 1059 WP_088220384.1 porin OmpA -
  RN333_RS13450 (RN333_13450) matP 2778396..2778848 (-) 453 WP_314113286.1 macrodomain Ter protein MatP -
  RN333_RS13455 (RN333_13455) - 2779034..2780794 (+) 1761 WP_314113288.1 Lon protease family protein -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24100.04 Da        Isoelectric Point: 9.8647

>NTDB_id=885659 RN333_RS13435 WP_314120805.1 2775547..2776176(-) (sxy/tfoX) [Enterobacter kobei strain DW108]
MKDMSYRRIYESREYLAALGTIRHRALFGGYSLSVDDTVFAMVAKGDLYLRACEQSAEYRAQHSAPLLTIMKRGRPVLLN
YYRVDESLWQDRETLMKLSTWSLAAAWKEKMQRLCEPRLKDLPNLNFQLEMLLWEAGIPDAATLKKLGAKACWLRLRTLN
THLGINILLALAGAIEGKHQAALPAQLRQTLTTWFTEFEAERRQPQRIT

Nucleotide


Download         Length: 630 bp        

>NTDB_id=885659 RN333_RS13435 WP_314120805.1 2775547..2776176(-) (sxy/tfoX) [Enterobacter kobei strain DW108]
ATGAAAGATATGTCTTATCGACGGATCTATGAATCACGTGAATATCTTGCGGCCTTGGGGACAATTCGCCATCGCGCGCT
GTTCGGCGGCTACAGCCTCTCCGTTGATGATACGGTGTTTGCCATGGTCGCAAAGGGCGATCTTTACCTGCGAGCCTGTG
AACAAAGTGCAGAATATCGGGCGCAACATTCAGCACCTCTGCTGACCATCATGAAACGCGGAAGGCCAGTATTATTAAAC
TATTACCGTGTTGATGAGAGCCTGTGGCAGGACCGCGAAACGCTGATGAAACTTTCAACATGGTCACTGGCTGCCGCGTG
GAAGGAAAAGATGCAGCGCCTGTGTGAGCCCAGACTAAAAGATCTGCCGAATCTGAACTTTCAACTGGAGATGCTGTTAT
GGGAAGCAGGAATACCGGATGCCGCAACGTTAAAAAAGCTGGGAGCCAAAGCGTGCTGGCTGCGCTTACGAACGCTCAAC
ACGCATCTGGGTATCAATATTCTGCTGGCGCTGGCGGGAGCCATAGAGGGTAAGCACCAGGCTGCACTCCCGGCGCAACT
GCGCCAGACGTTAACGACCTGGTTCACTGAATTTGAGGCTGAACGTCGTCAGCCTCAGCGGATAACCTGA

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(117-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

57.073

98.086

0.56