Detailed information    

insolico Bioinformatically predicted

Overview

Name   tonB2   Type   Machinery gene
Locus tag   OCUAc18_RS16505 Genome accession   NZ_AP024802
Coordinates   3412154..3413038 (-) Length   294 a.a.
NCBI ID   WP_002125537.1    Uniprot ID   A0A062IEN6
Organism   Acinetobacter baumannii strain OCU Ac18     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3407154..3418038
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OCUAc18_RS16490 (OCUAc18_32320) miaB 3409001..3410452 (+) 1452 WP_002125580.1 tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB -
  OCUAc18_RS16495 (OCUAc18_32330) - 3410490..3411578 (+) 1089 WP_000122983.1 PhoH family protein -
  OCUAc18_RS16500 (OCUAc18_32340) ybeY 3411588..3412064 (+) 477 WP_000703571.1 rRNA maturation RNase YbeY -
  OCUAc18_RS16505 (OCUAc18_32350) tonB2 3412154..3413038 (-) 885 WP_002125537.1 energy transducer TonB Machinery gene
  OCUAc18_RS16510 (OCUAc18_32360) - 3413269..3413940 (+) 672 WP_001193957.1 hypothetical protein -
  OCUAc18_RS16515 (OCUAc18_32370) - 3414098..3414811 (+) 714 WP_000201548.1 DUF3108 domain-containing protein -
  OCUAc18_RS16520 (OCUAc18_32380) - 3414884..3415459 (+) 576 WP_000543071.1 xanthine phosphoribosyltransferase -
  OCUAc18_RS16525 (OCUAc18_32390) wrbA 3415512..3416105 (-) 594 WP_002125540.1 NAD(P)H:quinone oxidoreductase -
  OCUAc18_RS16530 (OCUAc18_32400) - 3416393..3417640 (+) 1248 WP_000893466.1 YihY family inner membrane protein -

Sequence

Protein


Download         Length: 294 a.a.        Molecular weight: 33630.51 Da        Isoelectric Point: 9.0947

>NTDB_id=88563 OCUAc18_RS16505 WP_002125537.1 3412154..3413038(-) (tonB2) [Acinetobacter baumannii strain OCU Ac18]
MLKKRSLSIEPFYYWWQDRVFIAAIILAILLHIFVLLIHFAMPAPSEQSTKEIAISIHPTEDVIKHADFLAQADQQGSGA
FREAHRMSSNSPAPMPSDASTGEAQLETLEKVQQQRELKFEEKVLMTVLSWQKQAEESQRKKALEQLQSQFQAKAAMVAS
LEAQYLQRQQNFSRQQKIKTVDGIQAKKDASAAYLDKFREKVELYGNRYYPEEAKQQQLKGEVRLMVILNAQGGIRAIRL
LESSGHPVLDEAAKASVRRGAPFGRFDVNMKDISELRIIRTWRFDPAEAEFEVH

Nucleotide


Download         Length: 885 bp        

>NTDB_id=88563 OCUAc18_RS16505 WP_002125537.1 3412154..3413038(-) (tonB2) [Acinetobacter baumannii strain OCU Ac18]
ATGTTGAAAAAAAGAAGTCTATCCATAGAGCCTTTTTATTATTGGTGGCAAGACCGAGTCTTTATCGCTGCAATAATATT
AGCAATCTTACTGCATATTTTTGTGTTGCTCATCCATTTTGCGATGCCTGCGCCATCAGAACAATCGACTAAAGAAATTG
CAATATCGATTCATCCTACTGAAGATGTAATCAAGCATGCAGACTTTTTAGCTCAAGCCGATCAACAAGGTTCAGGGGCT
TTTCGGGAAGCTCATCGGATGTCGAGTAACTCTCCAGCGCCTATGCCAAGTGATGCTTCAACAGGAGAAGCTCAGCTAGA
AACTTTAGAAAAAGTGCAGCAACAAAGAGAACTTAAATTTGAAGAAAAAGTACTCATGACTGTATTGAGTTGGCAGAAAC
AAGCAGAGGAGAGCCAAAGAAAAAAAGCACTTGAACAATTACAAAGTCAGTTTCAGGCAAAAGCTGCCATGGTAGCGAGC
CTTGAAGCTCAGTATTTACAACGTCAGCAAAATTTTAGTCGCCAACAAAAAATAAAAACAGTAGATGGTATTCAAGCCAA
AAAAGATGCGTCGGCAGCTTATCTAGATAAATTTCGTGAAAAAGTAGAGCTTTATGGCAACCGTTATTATCCAGAAGAAG
CGAAACAGCAACAGTTAAAAGGTGAAGTTCGCCTTATGGTAATTTTGAATGCTCAAGGGGGAATTCGTGCAATTCGTTTG
CTTGAAAGCTCAGGTCATCCAGTTCTAGATGAAGCAGCAAAGGCATCGGTACGGCGTGGAGCGCCATTTGGCCGTTTTGA
TGTAAATATGAAAGATATTTCAGAGCTTCGTATTATTCGTACATGGCGTTTTGATCCAGCTGAAGCTGAATTTGAAGTTC
ATTAA

Domains

Predicted by InterproScan.

Gram-negative bacterial TonB protein C-terminal (TonB_C)

(207-284)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A062IEN6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  tonB2 Acinetobacter baumannii D1279779

98.98

100

0.99

Multiple sequence alignment