Detailed information    

insolico Bioinformatically predicted

Overview

Name   rapF   Type   Regulator
Locus tag   RNZ43_RS18520 Genome accession   NZ_CP135143
Coordinates   3695603..3696748 (+) Length   381 a.a.
NCBI ID   WP_416405911.1    Uniprot ID   -
Organism   Bacillus velezensis strain L33a     
Function   inhibit the DNA-binding function of ComA (predicted from homology)   
Competence regulation

Genomic Context

Location: 3690603..3701748
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RNZ43_RS18500 argS 3691229..3692899 (-) 1671 WP_043020956.1 arginine--tRNA ligase -
  RNZ43_RS18505 - 3692896..3693324 (-) 429 WP_032869448.1 DUF1934 domain-containing protein -
  RNZ43_RS18510 - 3693478..3693971 (+) 494 Protein_3587 bacteriocin biosynthesis protein AlbG -
  RNZ43_RS18515 - 3693978..3695372 (-) 1395 WP_416405909.1 YncE family protein -
  RNZ43_RS18520 rapF 3695603..3696748 (+) 1146 WP_416405911.1 aspartate phosphatase Regulator
  RNZ43_RS18525 - 3696732..3696851 (+) 120 WP_017418707.1 PhrC/PhrF family phosphatase-inhibitory pheromone -
  RNZ43_RS18530 speB 3696974..3697846 (-) 873 WP_003151054.1 agmatinase -
  RNZ43_RS18535 speE 3697906..3698736 (-) 831 WP_003151052.1 spermidine synthase -
  RNZ43_RS18540 - 3698936..3701008 (+) 2073 WP_416405913.1 transglycosylase domain-containing protein -
  RNZ43_RS18545 - 3701033..3701464 (-) 432 WP_070082525.1 hypothetical protein -

Sequence

Protein


Download         Length: 381 a.a.        Molecular weight: 45796.32 Da        Isoelectric Point: 5.0694

>NTDB_id=885625 RNZ43_RS18520 WP_416405911.1 3695603..3696748(+) (rapF) [Bacillus velezensis strain L33a]
MASVLSSSAVGEKINEWYMYIRRFSIPDAEYLRREIKEELAGLEDDQDLHLYYSLMEFRHNLMLEYLEPLESQRIEEQPR
LSDLLADIDKKQVRLTGRLDYYFNFFRGMYELECREYLSAIQFFKKAESKLTYVKDHIEKAEFYFKMSEVYYYMKQTYVS
MDYARQAYLIYKDEKKYNIRLTQCHSLFGANYLDVKQYDHAISHFQKAYTMAELEQQPQLMGRTLFNIALCHNNQNNKVE
AIPHLKEAIAVFEKAQMSHSLPQPYFLLTQIYFKLENIDNAYDYHKKGISICKEIDDIIYEEKFKFLEYLYMPDPRDTLI
NDCLHFLESKLMYADIEELALDVAKYYYTKEEYKKASVYFLKVEEARQQIEGGVNLYEIEV

Nucleotide


Download         Length: 1146 bp        

>NTDB_id=885625 RNZ43_RS18520 WP_416405911.1 3695603..3696748(+) (rapF) [Bacillus velezensis strain L33a]
GTGGCGAGTGTTTTATCATCTTCAGCGGTTGGAGAAAAAATCAACGAATGGTATATGTACATTCGAAGGTTCAGCATCCC
GGACGCCGAGTACTTGCGGAGAGAAATCAAAGAAGAACTTGCAGGTCTGGAAGATGATCAGGATCTTCATCTGTACTATT
CTCTCATGGAATTCCGCCACAATCTGATGCTCGAATACCTCGAACCGCTGGAATCGCAGCGGATAGAAGAACAGCCGAGA
CTATCGGATCTGCTCGCGGATATTGATAAAAAGCAGGTCCGGCTGACCGGACGTCTTGATTATTATTTTAATTTTTTCCG
GGGGATGTATGAGCTGGAATGCCGTGAATATCTTTCAGCGATTCAGTTTTTTAAGAAAGCTGAAAGCAAACTGACGTACG
TTAAAGATCATATAGAAAAAGCTGAATTTTACTTTAAAATGTCAGAAGTCTATTATTATATGAAACAAACTTATGTATCG
ATGGATTATGCGCGGCAGGCTTATTTAATTTATAAAGATGAAAAAAAATACAATATTAGATTAACCCAGTGCCATTCTTT
ATTTGGGGCTAATTATCTTGATGTAAAGCAATACGATCACGCGATTTCCCACTTTCAAAAGGCATATACGATGGCTGAAT
TGGAGCAGCAGCCGCAATTAATGGGGAGAACACTTTTTAACATCGCTTTATGCCATAATAATCAAAACAATAAAGTCGAG
GCTATTCCCCATTTAAAAGAAGCCATAGCTGTTTTTGAAAAAGCTCAAATGAGCCATTCACTTCCGCAGCCCTACTTCTT
ACTTACACAGATTTATTTTAAGTTAGAAAATATAGATAATGCGTACGATTATCATAAAAAAGGTATCTCAATATGTAAGG
AAATAGATGATATAATTTACGAGGAAAAATTTAAATTTTTGGAATATTTATATATGCCGGATCCAAGAGATACATTAATA
AACGATTGTCTGCATTTTCTTGAAAGTAAATTGATGTATGCTGATATTGAGGAATTAGCCCTTGATGTAGCTAAATATTA
TTACACAAAAGAAGAATATAAAAAAGCTTCTGTCTACTTTTTAAAAGTTGAAGAAGCCAGACAGCAGATCGAAGGAGGAG
TGAATTTATATGAAATTGAAGTATAA

Domains

Predicted by InterproScan.

response regulator aspartate phosphatase H, N terminal (RapH_N)

(5-65)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rapF Bacillus subtilis subsp. subtilis str. 168

69.816

100

0.698
  rapC Bacillus subtilis subsp. subtilis str. 168

53.158

99.738

0.53