Detailed information    

insolico Bioinformatically predicted

Overview

Name   comC   Type   Machinery gene
Locus tag   RNZ43_RS13390 Genome accession   NZ_CP135143
Coordinates   2706039..2706791 (-) Length   250 a.a.
NCBI ID   WP_416405716.1    Uniprot ID   -
Organism   Bacillus velezensis strain L33a     
Function   processing and translocation of ComGC; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2701039..2711791
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RNZ43_RS13365 mreC 2701475..2702338 (-) 864 WP_003152649.1 rod shape-determining protein MreC -
  RNZ43_RS13370 mreB 2702369..2703382 (-) 1014 WP_003152647.1 cell shape-determining protein MreB -
  RNZ43_RS13375 radC 2703474..2704169 (-) 696 WP_007408165.1 RadC family protein -
  RNZ43_RS13380 - 2704201..2704770 (-) 570 WP_032856929.1 Maf family protein -
  RNZ43_RS13385 - 2704911..2705912 (-) 1002 WP_416405715.1 SPOR domain-containing protein -
  RNZ43_RS13390 comC 2706039..2706791 (-) 753 WP_416405716.1 prepilin peptidase Machinery gene
  RNZ43_RS13395 - 2706931..2708223 (-) 1293 WP_416405717.1 bifunctional folylpolyglutamate synthase/dihydrofolate synthase -
  RNZ43_RS13400 - 2708282..2710924 (-) 2643 WP_416405718.1 valine--tRNA ligase -
  RNZ43_RS13405 - 2711377..2711568 (+) 192 WP_003152639.1 hypothetical protein -

Sequence

Protein


Download         Length: 250 a.a.        Molecular weight: 27138.77 Da        Isoelectric Point: 9.2521

>NTDB_id=885608 RNZ43_RS13390 WP_416405716.1 2706039..2706791(-) (comC) [Bacillus velezensis strain L33a]
MLLILFFLGLIFGSFFYTAACRVPLRISVISPRSSCSFCRLPLSWGELVPVVSYILQRGRCRNCRAKLSVMYPAAECWTA
CLFTAAGIHFGFSKELLVALLFLSLLMIVTMTDLQYMLIPDKVLLFFLPLFIAGRMFSPLDSWYAGFAGAVCGFFLLVFI
MFVSKGGIGAGDVKLFGVIGLTLGVKLVLIAFFLSVMIGAVYGMCAAARGSLGKKQPFPFAPAISAGSALSYLYGDELFS
FYIKLASGGA

Nucleotide


Download         Length: 753 bp        

>NTDB_id=885608 RNZ43_RS13390 WP_416405716.1 2706039..2706791(-) (comC) [Bacillus velezensis strain L33a]
GTGCTTTTGATTCTGTTTTTTCTCGGCTTGATTTTCGGTTCTTTTTTTTATACAGCAGCGTGCCGTGTCCCGCTGCGAAT
CTCGGTTATTTCGCCGCGTTCATCCTGTTCGTTTTGCCGCTTGCCGCTCTCCTGGGGGGAGCTTGTGCCCGTCGTCTCCT
ATATTCTGCAAAGAGGAAGATGCAGAAACTGCCGTGCGAAGCTGTCGGTTATGTATCCGGCGGCGGAATGCTGGACGGCG
TGTTTATTCACGGCTGCAGGCATTCATTTCGGTTTCTCAAAAGAACTGTTAGTCGCGCTGTTATTTCTGTCTCTCCTCAT
GATTGTTACTATGACGGATCTGCAATATATGCTGATTCCTGACAAAGTTCTGCTGTTTTTTCTTCCGCTTTTCATCGCCG
GCCGTATGTTTTCTCCGCTGGATTCATGGTATGCGGGGTTTGCCGGAGCCGTTTGCGGATTTTTTCTGCTAGTTTTTATC
ATGTTTGTCAGTAAAGGAGGCATCGGCGCAGGTGATGTGAAACTGTTTGGGGTGATCGGCCTGACGCTCGGCGTGAAGCT
CGTGCTCATTGCATTCTTTCTTTCCGTTATGATCGGAGCCGTATACGGTATGTGCGCCGCAGCCCGGGGCAGTCTTGGTA
AAAAGCAGCCATTTCCGTTTGCGCCGGCCATCTCAGCCGGGAGCGCTTTGAGTTATTTATACGGTGATGAGCTGTTTTCG
TTTTACATCAAGCTCGCTTCAGGCGGGGCTTGA

Domains

Predicted by InterproScan.

Bacterial Peptidase A24 N-terminal domain (A24_N_bact)

(8-90)

Type IV leader peptidase family (Peptidase_A24)

(101-204)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comC Bacillus subtilis subsp. subtilis str. 168

58.871

99.2

0.584