Detailed information    

insolico Bioinformatically predicted

Overview

Name   recO   Type   Machinery gene
Locus tag   RNZ43_RS12505 Genome accession   NZ_CP135143
Coordinates   2550851..2551618 (-) Length   255 a.a.
NCBI ID   WP_003152982.1    Uniprot ID   -
Organism   Bacillus velezensis strain L33a     
Function   ssDNA annealing; plasmid transformation (predicted from homology)   
DNA processing Homologous recombination

Genomic Context

Location: 2545851..2556618
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RNZ43_RS12485 - 2546053..2546865 (-) 813 WP_146277181.1 pyruvate, water dikinase regulatory protein -
  RNZ43_RS12490 ccpN 2546891..2547529 (-) 639 WP_416405696.1 transcriptional regulator CcpN -
  RNZ43_RS12495 glyS 2547630..2549669 (-) 2040 WP_416405697.1 glycine--tRNA ligase subunit beta -
  RNZ43_RS12500 glyQ 2549662..2550549 (-) 888 WP_003152984.1 glycine--tRNA ligase subunit alpha -
  RNZ43_RS12505 recO 2550851..2551618 (-) 768 WP_003152982.1 DNA repair protein RecO Machinery gene
  RNZ43_RS12510 - 2551655..2551798 (-) 144 WP_007408286.1 YqzL family protein -
  RNZ43_RS12515 era 2551954..2552859 (-) 906 WP_007408285.1 GTPase Era -
  RNZ43_RS12520 - 2552840..2553250 (-) 411 WP_003152976.1 cytidine deaminase -
  RNZ43_RS12525 - 2553374..2553748 (-) 375 WP_003152974.1 diacylglycerol kinase family protein -
  RNZ43_RS12530 ybeY 2553729..2554202 (-) 474 WP_003152973.1 rRNA maturation RNase YbeY -
  RNZ43_RS12535 - 2554203..2556335 (-) 2133 WP_015387990.1 HD family phosphohydrolase -

Sequence

Protein


Download         Length: 255 a.a.        Molecular weight: 29264.86 Da        Isoelectric Point: 8.3099

>NTDB_id=885601 RNZ43_RS12505 WP_003152982.1 2550851..2551618(-) (recO) [Bacillus velezensis strain L33a]
MLTKCEGIVLRTNDYGETNKIVTLLTREHGKIGVMARGARKSASRLSAVSQPFLYGSFLMQRTSGLGTLQQGEMILSMRT
IREDLFLTAYAAFIAELTDKGTEEKKPNPYLFELILESFKRLNDGTDPDVITFIVQMKMLGVMGLYPELNHCVHCKSGEG
TFHFSIRDNGFICHRCFEKDPYRVPISPQTARLLRLFYYFDIGRLGSVSLKQETKNEIKQVIDLYYEEYSGLYLKSKRFL
DQMESMKNLLDENKS

Nucleotide


Download         Length: 768 bp        

>NTDB_id=885601 RNZ43_RS12505 WP_003152982.1 2550851..2551618(-) (recO) [Bacillus velezensis strain L33a]
ATGCTGACTAAATGTGAAGGAATCGTGCTCCGTACGAATGACTACGGGGAGACGAATAAAATCGTGACATTGCTGACGAG
GGAACACGGCAAAATCGGCGTCATGGCAAGGGGCGCCAGGAAGTCAGCCAGCCGGCTGTCAGCAGTCAGCCAGCCGTTTT
TGTACGGGTCATTTTTAATGCAAAGAACATCCGGACTCGGCACGCTCCAGCAGGGTGAAATGATTCTCAGCATGAGAACG
ATCAGAGAAGATTTATTTTTGACGGCGTATGCCGCTTTTATCGCTGAACTCACTGACAAAGGAACGGAAGAGAAGAAACC
GAACCCCTATTTATTCGAATTGATTCTCGAATCCTTTAAGAGGCTGAATGACGGGACTGACCCGGACGTGATCACCTTCA
TCGTGCAGATGAAAATGCTCGGCGTCATGGGGCTGTATCCGGAGCTGAATCATTGTGTCCACTGCAAAAGCGGGGAAGGG
ACGTTTCATTTTTCGATAAGAGATAACGGTTTTATCTGCCACCGCTGCTTTGAAAAGGATCCGTACAGAGTTCCGATTTC
GCCGCAAACGGCAAGGCTGCTAAGGCTTTTTTATTACTTTGATATCGGAAGGCTCGGCAGCGTCTCGTTAAAACAGGAAA
CCAAAAACGAAATTAAACAGGTCATTGATCTGTATTACGAGGAATATTCAGGACTTTATTTAAAGTCAAAACGGTTTTTA
GACCAGATGGAAAGCATGAAGAACCTTTTGGATGAAAACAAAAGTTGA

Domains

Predicted by InterproScan.

Recombination protein O C terminal (RecO_C)

(82-237)

Recombination protein O N terminal (RecO_N)

(1-75)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recO Bacillus subtilis subsp. subtilis str. 168

89.412

100

0.894