Detailed information    

insolico Bioinformatically predicted

Overview

Name   cinA   Type   Machinery gene
Locus tag   RNZ43_RS09055 Genome accession   NZ_CP135143
Coordinates   1756274..1757524 (+) Length   416 a.a.
NCBI ID   WP_043867100.1    Uniprot ID   -
Organism   Bacillus velezensis strain L33a     
Function   unknown (predicted from homology)   
Unclear

Genomic Context

Location: 1751274..1762524
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RNZ43_RS09025 yfmH 1751358..1752644 (+) 1287 WP_070081837.1 EF-P 5-aminopentanol modification-associated protein YfmH -
  RNZ43_RS09030 ymfI 1752703..1753431 (+) 729 WP_416406322.1 elongation factor P 5-aminopentanone reductase -
  RNZ43_RS09035 - 1753507..1753764 (+) 258 WP_003154150.1 DUF3243 domain-containing protein -
  RNZ43_RS09040 - 1753892..1754683 (+) 792 WP_003154149.1 DUF3388 domain-containing protein -
  RNZ43_RS09045 - 1754702..1755601 (+) 900 WP_070081839.1 helix-turn-helix domain-containing protein -
  RNZ43_RS09050 pgsA 1755675..1756256 (+) 582 WP_003154147.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  RNZ43_RS09055 cinA 1756274..1757524 (+) 1251 WP_043867100.1 competence/damage-inducible protein A Machinery gene
  RNZ43_RS09060 recA 1757695..1758738 (+) 1044 WP_003154145.1 recombinase RecA Machinery gene
  RNZ43_RS09065 - 1758907..1760088 (+) 1182 WP_416406323.1 serine hydrolase domain-containing protein -
  RNZ43_RS09070 rny 1760381..1761940 (+) 1560 WP_003154140.1 ribonuclease Y -

Sequence

Protein


Download         Length: 416 a.a.        Molecular weight: 45106.44 Da        Isoelectric Point: 5.3789

>NTDB_id=885587 RNZ43_RS09055 WP_043867100.1 1756274..1757524(+) (cinA) [Bacillus velezensis strain L33a]
MEIAKKAEIIAVGSELLLGQIANTNAQFISKELAEIGVNVFYHTAVGDNPERLKQVIRIAEERSDLIIFSGGLGPTKDDL
TKETIANTLGRPLVLNDEAFRSIEEYFAKTKRTMSPNNRKQALVIEGSDVLANHFGMAPGMLAEHGSRLYMLLPGPPSEL
RPMFENEAKPLLLKKLGSNEKIVSTVLRFFGIGESQLEADLEDIIDAQTNPTIAPLAADGEVTLRLTAKHADEKETERLL
KETEAAILERVGEFFYGYDDTSLVKELSKACRQNKITISSAESFTGGLFSEWVTDLSGASQLFAGGVVCYSDSVKQHVLG
VKAETLAESGAVSKECAKELAAGVRKLTGSDIGISFTGVAGPDPQEGHAPGRVFIGISAEGKEEVHEFHFAGSRTGIRKR
AAKYGCHLILKMLDQK

Nucleotide


Download         Length: 1251 bp        

>NTDB_id=885587 RNZ43_RS09055 WP_043867100.1 1756274..1757524(+) (cinA) [Bacillus velezensis strain L33a]
ATGGAAATAGCAAAAAAAGCAGAAATCATTGCGGTCGGCTCGGAGCTTCTGCTCGGCCAGATCGCCAATACGAACGCGCA
GTTTATCAGTAAAGAGCTGGCGGAAATCGGTGTAAACGTGTTTTACCATACCGCTGTCGGTGACAATCCGGAGCGGCTTA
AGCAAGTCATCCGCATTGCCGAAGAGCGCTCAGACCTGATTATTTTTTCAGGCGGCCTCGGGCCGACCAAGGACGATTTA
ACGAAAGAAACCATTGCAAACACACTGGGGCGCCCGCTCGTTCTGAATGACGAAGCATTCCGGTCGATCGAAGAATATTT
CGCGAAAACAAAACGGACCATGTCGCCGAATAACCGCAAACAGGCGCTCGTCATTGAGGGCTCGGACGTTTTGGCGAATC
ATTTCGGCATGGCGCCGGGAATGCTTGCAGAGCACGGCTCAAGGCTTTATATGCTGCTTCCCGGACCGCCGAGCGAGCTG
CGTCCGATGTTTGAAAATGAAGCGAAACCGCTGCTTCTTAAAAAGCTTGGTTCTAATGAGAAAATCGTTTCAACCGTGCT
GCGGTTTTTCGGAATCGGTGAATCCCAGCTTGAAGCTGATTTAGAAGATATCATTGACGCGCAGACGAATCCGACGATTG
CGCCGCTTGCTGCTGACGGCGAGGTCACGCTGCGTTTAACGGCGAAACATGCTGACGAAAAAGAAACAGAACGGCTTTTA
AAAGAAACGGAAGCCGCCATTTTAGAACGTGTCGGTGAATTTTTCTACGGATATGATGATACGTCCCTGGTGAAGGAGCT
TTCAAAAGCATGCAGACAAAACAAAATCACGATTTCTTCTGCCGAAAGCTTTACAGGCGGCCTGTTTTCAGAGTGGGTGA
CTGATTTAAGCGGTGCGTCTCAACTATTTGCAGGGGGCGTTGTCTGCTATTCCGACAGCGTGAAACAGCATGTGCTCGGC
GTGAAAGCTGAGACGCTCGCAGAAAGCGGAGCGGTCAGCAAAGAGTGTGCGAAAGAGCTTGCAGCCGGTGTGAGAAAGCT
GACCGGAAGCGATATCGGCATCAGCTTTACCGGGGTTGCGGGTCCCGACCCGCAGGAAGGGCATGCGCCGGGCCGCGTCT
TTATCGGCATTTCAGCGGAAGGAAAAGAAGAGGTGCACGAATTTCACTTTGCCGGCTCAAGAACCGGGATCAGAAAGCGC
GCCGCTAAATACGGCTGCCATCTCATTTTAAAAATGCTGGATCAAAAATAA

Domains

Predicted by InterproScan.

Competence-damaged protein (CinA)

(261-413)

Damage-inducible protein CinA KH domain (CinA_KH)

(184-257)

Probable molybdopterin binding domain (MoCF_biosynth)

(9-172)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cinA Bacillus subtilis subsp. subtilis str. 168

90.385

100

0.904
  cinA Streptococcus mitis NCTC 12261

47.368

100

0.476
  cinA Streptococcus mitis SK321

46.89

100

0.471
  cinA Streptococcus pneumoniae TIGR4

46.411

100

0.466
  cinA Streptococcus pneumoniae Rx1

46.411

100

0.466
  cinA Streptococcus pneumoniae R6

46.411

100

0.466
  cinA Streptococcus pneumoniae D39

46.172

100

0.464
  cinA Streptococcus mutans UA159

46.247

99.279

0.459
  cinA Streptococcus suis isolate S10

40.921

93.99

0.385