Detailed information    

insolico Bioinformatically predicted

Overview

Name   abrB   Type   Regulator
Locus tag   RNZ43_RS07785 Genome accession   NZ_CP135143
Coordinates   1458505..1458789 (+) Length   94 a.a.
NCBI ID   WP_024085249.1    Uniprot ID   -
Organism   Bacillus velezensis strain L33a     
Function   repression of comK; repression of rok (predicted from homology)   
Competence regulation

Genomic Context

Location: 1453505..1463789
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RNZ43_RS07765 - 1454751..1455659 (+) 909 WP_070081753.1 ketopantoate reductase family protein -
  RNZ43_RS07770 - 1455689..1456921 (-) 1233 WP_070081754.1 aminopeptidase -
  RNZ43_RS07775 - 1457022..1457156 (-) 135 WP_003154559.1 protein YkpC -
  RNZ43_RS07780 mreBH 1457228..1458235 (-) 1008 WP_003154558.1 cell shape-determining protein MreBH -
  RNZ43_RS07785 abrB 1458505..1458789 (+) 285 WP_024085249.1 AbrB/MazE/SpoVT family DNA-binding domain-containing protein Regulator
  RNZ43_RS07790 - 1458962..1460266 (+) 1305 WP_014304932.1 ATP-binding protein -
  RNZ43_RS07795 - 1460268..1461095 (+) 828 WP_003154555.1 gamma-glutamylcyclotransferase -
  RNZ43_RS07800 ktrC 1461136..1461801 (+) 666 WP_003154554.1 Ktr system potassium transporter KtrC -
  RNZ43_RS07805 ade 1461950..1463683 (+) 1734 WP_416406294.1 adenine deaminase -

Sequence

Protein


Download         Length: 94 a.a.        Molecular weight: 10574.41 Da        Isoelectric Point: 5.2271

>NTDB_id=885584 RNZ43_RS07785 WP_024085249.1 1458505..1458789(+) (abrB) [Bacillus velezensis strain L33a]
MKSIGVVRKVDELGRIVMPIELRRALDIAIKDSIEFFVDGDKIVLKKYKPHGICLMTGEITSENQEYGNGKIILSPEGAK
MLLEEIEEALKDRS

Nucleotide


Download         Length: 285 bp        

>NTDB_id=885584 RNZ43_RS07785 WP_024085249.1 1458505..1458789(+) (abrB) [Bacillus velezensis strain L33a]
ATGAAATCAATTGGTGTAGTAAGAAAAGTAGACGAACTCGGGCGTATTGTCATGCCGATTGAATTGAGAAGAGCATTGGA
TATCGCTATTAAAGATAGTATTGAATTTTTCGTTGACGGAGACAAAATTGTCTTGAAAAAATACAAGCCGCATGGCATTT
GCTTAATGACCGGGGAAATTACCTCCGAAAATCAGGAGTACGGCAACGGTAAAATTATTTTAAGTCCTGAAGGAGCGAAA
ATGCTGCTTGAGGAAATCGAGGAAGCGTTAAAAGATAGATCATAA

Domains

Predicted by InterproScan.

AbrB C-terminal domain (AbrB_C)

(54-88)

Antidote-toxin recognition MazE, bacterial antitoxin (MazE_antitoxin)

(8-51)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  abrB Bacillus subtilis subsp. subtilis str. 168

55.435

97.872

0.543