Detailed information    

insolico Bioinformatically predicted

Overview

Name   kre   Type   Regulator
Locus tag   RNZ43_RS07575 Genome accession   NZ_CP135143
Coordinates   1422148..1422612 (-) Length   154 a.a.
NCBI ID   WP_003154622.1    Uniprot ID   A0A9Q3QIJ3
Organism   Bacillus velezensis strain L33a     
Function   regulation of regulators (predicted from homology)   
Competence regulation

Genomic Context

Location: 1417148..1427612
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RNZ43_RS07555 - 1417628..1419448 (+) 1821 WP_416406287.1 PAS domain-containing protein -
  RNZ43_RS07560 - 1419424..1420643 (-) 1220 Protein_1431 aminotransferase A -
  RNZ43_RS07565 - 1420844..1421005 (-) 162 WP_164672396.1 hypothetical protein -
  RNZ43_RS07570 cheV 1421194..1422105 (+) 912 WP_003154623.1 chemotaxis protein CheV -
  RNZ43_RS07575 kre 1422148..1422612 (-) 465 WP_003154622.1 YkyB family protein Regulator
  RNZ43_RS07580 - 1422735..1424027 (-) 1293 WP_043867050.1 MFS transporter -
  RNZ43_RS07585 - 1424103..1424597 (-) 495 WP_088037173.1 L,D-transpeptidase family protein -
  RNZ43_RS07590 - 1424672..1425535 (-) 864 WP_416406288.1 metallophosphoesterase -
  RNZ43_RS07595 fadH 1425680..1426441 (+) 762 WP_416406289.1 2,4-dienoyl-CoA reductase -
  RNZ43_RS07600 - 1426552..1427100 (+) 549 Protein_1439 hypothetical protein -

Sequence

Protein


Download         Length: 154 a.a.        Molecular weight: 17784.55 Da        Isoelectric Point: 10.4864

>NTDB_id=885582 RNZ43_RS07575 WP_003154622.1 1422148..1422612(-) (kre) [Bacillus velezensis strain L33a]
MDDHAYSKELQPTIENLSKAVYTVNRHAKTAPNPKYLYLLKKRALQKLVKEGKGKKIGLHFSNNPRFSQQQSDVLISIGD
YYFHMPPTKEDFQHLPHLGTLNQSYRNPKAQMSLTKAKNVLQKYVGLKEKPLAANRQQPAYHKPVFKKLGESYF

Nucleotide


Download         Length: 465 bp        

>NTDB_id=885582 RNZ43_RS07575 WP_003154622.1 1422148..1422612(-) (kre) [Bacillus velezensis strain L33a]
ATGGACGACCACGCTTATTCGAAAGAGCTGCAGCCAACCATCGAGAATCTTTCAAAAGCTGTTTATACTGTGAACCGCCA
TGCAAAAACCGCCCCCAACCCTAAATACCTTTATCTGCTGAAAAAACGGGCATTACAAAAGCTTGTGAAAGAAGGCAAAG
GGAAAAAAATAGGGCTTCACTTTTCAAATAATCCCAGGTTTAGCCAACAGCAGTCAGACGTACTTATCTCTATCGGAGAC
TACTATTTTCACATGCCTCCAACAAAAGAAGACTTCCAGCATCTTCCGCATTTAGGTACGTTAAATCAATCGTACCGCAA
TCCTAAAGCACAAATGTCTTTGACAAAAGCGAAAAACGTATTGCAAAAATATGTGGGCTTAAAGGAAAAACCGCTTGCCG
CCAACAGGCAGCAGCCCGCTTATCATAAACCCGTATTTAAAAAACTTGGTGAGAGTTATTTTTAA

Domains

Predicted by InterproScan.

YkyB-like protein (YkyB)

(13-127)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  kre Bacillus subtilis subsp. subtilis str. 168

92.857

100

0.929