Detailed information    

insolico Bioinformatically predicted

Overview

Name   med   Type   Regulator
Locus tag   RNZ43_RS06115 Genome accession   NZ_CP135143
Coordinates   1157253..1158206 (+) Length   317 a.a.
NCBI ID   WP_070081621.1    Uniprot ID   -
Organism   Bacillus velezensis strain L33a     
Function   regulation of regulators (predicted from homology)   
Competence regulation

Genomic Context

Location: 1152253..1163206
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RNZ43_RS06090 argF 1154071..1155042 (+) 972 WP_416406236.1 ornithine carbamoyltransferase -
  RNZ43_RS06095 - 1155118..1155297 (+) 180 WP_003155070.1 YjzC family protein -
  RNZ43_RS06100 - 1155334..1155519 (-) 186 WP_367069751.1 YjzD family protein -
  RNZ43_RS06105 - 1155780..1156514 (+) 735 WP_416406237.1 hypothetical protein -
  RNZ43_RS06110 - 1156597..1157163 (+) 567 WP_094247079.1 hypothetical protein -
  RNZ43_RS06115 med 1157253..1158206 (+) 954 WP_070081621.1 BMP family ABC transporter substrate-binding protein Regulator
  RNZ43_RS06120 comZ 1158219..1158410 (+) 192 WP_003155061.1 ComZ family protein Regulator
  RNZ43_RS06125 - 1158440..1158658 (-) 219 WP_003155059.1 hypothetical protein -
  RNZ43_RS06130 - 1158826..1159764 (+) 939 WP_007409122.1 beta-ketoacyl-ACP synthase III -
  RNZ43_RS06135 fabF 1159787..1161025 (+) 1239 WP_015417206.1 beta-ketoacyl-ACP synthase II -
  RNZ43_RS06140 - 1161109..1161894 (+) 786 WP_012117278.1 DUF2268 domain-containing protein -
  RNZ43_RS06145 - 1162068..1163054 (+) 987 WP_029325950.1 ABC transporter ATP-binding protein -

Sequence

Protein


Download         Length: 317 a.a.        Molecular weight: 35315.92 Da        Isoelectric Point: 4.5594

>NTDB_id=885574 RNZ43_RS06115 WP_070081621.1 1157253..1158206(+) (med) [Bacillus velezensis strain L33a]
MITRLVMIFSVLLLLSGCAQTPFKGKIEKVGMLFPDTISDLVWGTKGYKGLLAIQSEFNVDVYYKENIRSDEDILKAIDD
FHKKGVNLLYGHGNEYEEIFNMISKDYPDMEFVVANGTAKSDNVTSVHLMGEAMGFFGGMTAAHMSKTNEVGVIASFLWQ
PEVDGFIKGAKYEKPDITVNTEFTDHWDNGNEALHLYEKLKAEGTDVVYPAGDGYNVPVIQQIKKDGLYAIGYVAEQSNL
GKNTVLTSTVQNVDKAYTLIAEQYNKGTLKSGDHDFDFREGVVEMGTFSPLVDKAFQDKISDLVKTYNQTNELPSNE

Nucleotide


Download         Length: 954 bp        

>NTDB_id=885574 RNZ43_RS06115 WP_070081621.1 1157253..1158206(+) (med) [Bacillus velezensis strain L33a]
TTGATCACCAGGCTTGTCATGATCTTTTCTGTCCTCCTTTTATTGAGCGGATGCGCACAAACTCCGTTTAAAGGAAAAAT
TGAGAAGGTCGGAATGCTTTTTCCCGATACCATCAGTGACTTGGTATGGGGTACAAAAGGTTACAAAGGTTTATTAGCGA
TACAATCTGAATTTAACGTTGACGTTTATTATAAAGAAAATATCAGATCCGATGAAGATATTTTAAAAGCGATAGATGAT
TTTCATAAAAAAGGAGTCAATCTTTTATACGGGCACGGAAATGAATACGAGGAAATCTTCAATATGATCAGCAAGGATTA
TCCCGACATGGAATTCGTCGTCGCAAACGGAACGGCGAAAAGCGATAATGTCACAAGCGTTCACCTTATGGGAGAAGCAA
TGGGCTTTTTCGGGGGAATGACGGCCGCCCATATGTCAAAAACCAATGAGGTAGGTGTCATCGCCTCCTTTCTGTGGCAG
CCTGAAGTAGACGGCTTTATCAAAGGGGCGAAATATGAAAAGCCTGATATCACCGTCAATACTGAATTTACGGACCACTG
GGATAACGGCAATGAAGCGCTGCATCTTTACGAGAAGTTAAAAGCGGAAGGCACGGATGTTGTATATCCGGCCGGAGACG
GGTATAATGTTCCTGTCATTCAGCAAATCAAAAAAGACGGGCTTTACGCCATCGGCTATGTCGCCGAGCAATCGAATCTC
GGCAAAAACACGGTGCTGACAAGCACGGTGCAAAACGTAGATAAAGCCTATACATTAATTGCCGAGCAATATAATAAAGG
TACGCTCAAGAGCGGAGATCACGACTTTGATTTCAGGGAAGGAGTCGTTGAAATGGGGACGTTCAGCCCGCTGGTGGACA
AAGCGTTTCAAGACAAAATCTCAGACCTTGTCAAAACGTATAACCAAACAAATGAACTGCCGTCAAATGAATAG

Domains

Predicted by InterproScan.

ABC transporter substrate-binding protein PnrA-like (Bmp)

(27-317)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  med Bacillus subtilis subsp. subtilis str. 168

78.549

100

0.785