Detailed information    

insolico Bioinformatically predicted

Overview

Name   recX   Type   Regulator
Locus tag   RNZ43_RS04680 Genome accession   NZ_CP135143
Coordinates   894381..895172 (+) Length   263 a.a.
NCBI ID   WP_003155502.1    Uniprot ID   A0A9Q3QM78
Organism   Bacillus velezensis strain L33a     
Function   inhibit excessive RecA-mediated recombination (predicted from homology)   
Competence regulation

Genomic Context

Location: 889381..900172
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RNZ43_RS04655 - 891376..892260 (+) 885 WP_416406159.1 PhzF family phenazine biosynthesis isomerase -
  RNZ43_RS04660 - 892337..892921 (+) 585 WP_094247140.1 nitroreductase -
  RNZ43_RS04665 - 892960..893151 (-) 192 WP_003155508.1 YfhD family protein -
  RNZ43_RS04670 - 893222..893332 (-) 111 WP_003155504.1 YfhE family protein -
  RNZ43_RS04675 - 893390..894289 (-) 900 WP_025650232.1 TIGR01777 family oxidoreductase -
  RNZ43_RS04680 recX 894381..895172 (+) 792 WP_003155502.1 recombination regulator RecX Regulator
  RNZ43_RS04685 - 895179..895490 (+) 312 WP_025650230.1 YfhH family protein -
  RNZ43_RS04690 - 895637..896830 (+) 1194 WP_025650229.1 MFS transporter -
  RNZ43_RS04695 - 896869..897258 (-) 390 WP_146283704.1 DUF2606 family protein -
  RNZ43_RS04700 - 897221..898132 (-) 912 WP_003155497.1 trypsin-like serine peptidase -
  RNZ43_RS04705 - 898277..898429 (-) 153 WP_003155495.1 small, acid-soluble spore protein K -
  RNZ43_RS04710 - 898553..898822 (+) 270 WP_016936717.1 YfhJ family protein -
  RNZ43_RS04715 - 898954..899481 (+) 528 WP_070081523.1 SH3 domain-containing protein -
  RNZ43_RS04720 - 899567..899902 (+) 336 WP_070081524.1 SdpI family protein -

Sequence

Protein


Download         Length: 263 a.a.        Molecular weight: 30978.18 Da        Isoelectric Point: 6.2735

>NTDB_id=885566 RNZ43_RS04680 WP_003155502.1 894381..895172(+) (recX) [Bacillus velezensis strain L33a]
MPFITKISTQKKNTERFNIFLDEKYAFSVDADVLVRFDLKKGKELDELDILEIQHGDDVKKAFNRAVEFLSYRMRSEKEV
RDHLKKKETPDMVISEVIHKLYDYRYLNDKEFAEAYASTHKKTNGKGPDVLFRELKAKGIDDDTIKETLSAFTFDEQIQE
ALKHIGKILKKDKKLSTKEIRQRAQMQLQRKGFPFDVINAALEQTEYENDDEAEMEALKAHAEKAIRKYRYDGSYESGMK
VKQYLFRKGFSIDDIDQFLQEEE

Nucleotide


Download         Length: 792 bp        

>NTDB_id=885566 RNZ43_RS04680 WP_003155502.1 894381..895172(+) (recX) [Bacillus velezensis strain L33a]
ATGCCGTTTATTACAAAAATATCGACCCAAAAGAAAAATACCGAGCGCTTCAACATCTTTCTTGATGAGAAATATGCATT
CAGCGTCGACGCCGACGTGCTTGTGCGTTTTGACCTGAAAAAAGGGAAAGAACTGGACGAGCTTGACATTCTTGAAATCC
AGCACGGTGATGACGTGAAAAAAGCCTTTAACCGCGCCGTAGAATTTTTATCATACCGGATGCGCTCTGAAAAAGAAGTC
CGGGATCATCTGAAGAAAAAAGAAACACCGGACATGGTCATTTCTGAAGTCATCCATAAACTGTACGATTACCGCTACTT
AAATGACAAAGAATTTGCCGAAGCCTATGCGAGCACCCACAAAAAAACAAACGGCAAAGGCCCTGACGTCCTGTTCCGCG
AGCTGAAAGCGAAAGGAATAGACGACGATACCATCAAGGAGACGCTCAGCGCGTTTACATTTGATGAGCAGATTCAAGAA
GCGCTGAAACATATCGGCAAAATCCTCAAAAAAGACAAAAAGCTGTCCACAAAAGAGATCAGACAGCGGGCGCAGATGCA
GCTTCAGCGAAAAGGTTTCCCTTTCGACGTCATCAATGCCGCTCTGGAGCAGACGGAGTATGAAAATGATGATGAAGCCG
AGATGGAAGCTCTGAAGGCTCATGCGGAAAAAGCGATCAGGAAATACCGCTATGACGGCAGCTATGAAAGCGGAATGAAG
GTCAAACAGTACTTATTCAGAAAAGGATTCTCGATTGACGATATTGATCAATTCTTGCAGGAAGAGGAGTAA

Domains

Predicted by InterproScan.

RecX family (RecX_HTH2)

(84-206)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recX Bacillus subtilis subsp. subtilis str. 168

79.087

100

0.791