Detailed information    

insolico Bioinformatically predicted

Overview

Name   phrC   Type   Regulator
Locus tag   RNZ43_RS02335 Genome accession   NZ_CP135143
Coordinates   434256..434375 (+) Length   39 a.a.
NCBI ID   WP_003156334.1    Uniprot ID   I2C1C3
Organism   Bacillus velezensis strain L33a     
Function   antagonize RapC (predicted from homology)   
Competence regulation

Genomic Context

Location: 429256..439375
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RNZ43_RS02320 - 430868..431551 (+) 684 WP_015388707.1 response regulator transcription factor -
  RNZ43_RS02325 - 431538..432971 (+) 1434 WP_416406058.1 ATP-binding protein -
  RNZ43_RS02330 rapC 433124..434272 (+) 1149 WP_014304340.1 Rap family tetratricopeptide repeat protein Regulator
  RNZ43_RS02335 phrC 434256..434375 (+) 120 WP_003156334.1 PhrC/PhrF family phosphatase-inhibitory pheromone Regulator
  RNZ43_RS02340 - 434525..434635 (-) 111 WP_369719092.1 YjcZ family sporulation protein -
  RNZ43_RS02345 - 434715..436079 (-) 1365 WP_167859883.1 aspartate kinase -
  RNZ43_RS02350 ceuB 436494..437447 (+) 954 WP_003156332.1 ABC transporter permease Machinery gene
  RNZ43_RS02355 - 437437..438384 (+) 948 WP_416406059.1 iron chelate uptake ABC transporter family permease subunit -
  RNZ43_RS02360 - 438378..439136 (+) 759 WP_022552588.1 ABC transporter ATP-binding protein -

Sequence

Protein


Download         Length: 39 a.a.        Molecular weight: 4228.96 Da        Isoelectric Point: 8.0285

>NTDB_id=885563 RNZ43_RS02335 WP_003156334.1 434256..434375(+) (phrC) [Bacillus velezensis strain L33a]
MKLKSKWFVICLAAAAIFTVTGAGQTDQAEFHVAERGMT

Nucleotide


Download         Length: 120 bp        

>NTDB_id=885563 RNZ43_RS02335 WP_003156334.1 434256..434375(+) (phrC) [Bacillus velezensis strain L33a]
ATGAAATTGAAATCTAAATGGTTTGTTATTTGTTTAGCAGCCGCCGCGATTTTTACAGTGACAGGTGCAGGCCAGACAGA
TCAGGCTGAATTCCATGTAGCTGAAAGAGGAATGACGTGA

Domains

Predicted by InterproScan.

Rap-phr extracellular signalling (PhrC_PhrF)

(3-39)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB I2C1C3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  phrC Bacillus subtilis subsp. subtilis str. 168

70

100

0.718