Detailed information
Bioinformatically predicted
Overview
| Name | xcpV | Type | Machinery gene |
| Locus tag | OCUAc18_RS08945 | Genome accession | NZ_AP024802 |
| Coordinates | 1837280..1837660 (+) | Length | 126 a.a. |
| NCBI ID | WP_000836911.1 | Uniprot ID | - |
| Organism | Acinetobacter baumannii strain OCU Ac18 | ||
| Function | pseudopilus assembly (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 1832280..1842660
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| OCUAc18_RS08915 (OCUAc18_17380) | kdsB | 1833183..1833944 (+) | 762 | WP_000680704.1 | 3-deoxy-manno-octulosonate cytidylyltransferase | - |
| OCUAc18_RS08920 (OCUAc18_17390) | - | 1833956..1834936 (+) | 981 | WP_001075416.1 | DNA polymerase III subunit delta' | - |
| OCUAc18_RS08925 (OCUAc18_17400) | - | 1834948..1835289 (+) | 342 | WP_001183024.1 | PilZ domain-containing protein | - |
| OCUAc18_RS08930 (OCUAc18_17410) | - | 1835307..1836080 (+) | 774 | WP_000497303.1 | TatD family hydrolase | - |
| OCUAc18_RS08935 (OCUAc18_17420) | - | 1836118..1836726 (+) | 609 | WP_000375839.1 | TetR/AcrR family transcriptional regulator | - |
| OCUAc18_RS08940 (OCUAc18_17430) | - | 1836736..1837290 (+) | 555 | WP_000841373.1 | type II secretion system protein | - |
| OCUAc18_RS08945 (OCUAc18_17440) | xcpV | 1837280..1837660 (+) | 381 | WP_000836911.1 | type II secretion system minor pseudopilin GspI | Machinery gene |
| OCUAc18_RS08950 (OCUAc18_17450) | xcpW | 1837660..1838361 (+) | 702 | WP_000594576.1 | type II secretion system minor pseudopilin GspJ | Machinery gene |
| OCUAc18_RS08955 (OCUAc18_17460) | gspK | 1838361..1839320 (+) | 960 | WP_000301465.1 | type II secretion system minor pseudopilin GspK | - |
| OCUAc18_RS08960 (OCUAc18_17470) | - | 1839550..1840146 (+) | 597 | WP_000908453.1 | 6-carboxytetrahydropterin synthase | - |
| OCUAc18_RS08965 (OCUAc18_17480) | ung | 1840197..1840910 (+) | 714 | WP_001177530.1 | uracil-DNA glycosylase | - |
| OCUAc18_RS08970 (OCUAc18_17490) | - | 1840907..1842031 (+) | 1125 | WP_001983908.1 | enoyl-CoA hydratase/isomerase family protein | - |
| OCUAc18_RS08975 (OCUAc18_17500) | tadA | 1842038..1842541 (+) | 504 | WP_001997771.1 | tRNA adenosine(34) deaminase TadA | - |
Sequence
Protein
Download Length: 126 a.a. Molecular weight: 13975.20 Da Isoelectric Point: 9.8004
>NTDB_id=88556 OCUAc18_RS08945 WP_000836911.1 1837280..1837660(+) (xcpV) [Acinetobacter baumannii strain OCU Ac18]
MKSKGFTLLEVMVALAIFAVAAVALTKVAMQYTQSTSNAILRTKAQFVAMNEVAMMEINQEWLQGTQSKQVTSQGETWQI
DKSAQSTISPNVQKIDLQVSLYDPDKGKVQNGITHMVFFNYPVKAK
MKSKGFTLLEVMVALAIFAVAAVALTKVAMQYTQSTSNAILRTKAQFVAMNEVAMMEINQEWLQGTQSKQVTSQGETWQI
DKSAQSTISPNVQKIDLQVSLYDPDKGKVQNGITHMVFFNYPVKAK
Nucleotide
Download Length: 381 bp
>NTDB_id=88556 OCUAc18_RS08945 WP_000836911.1 1837280..1837660(+) (xcpV) [Acinetobacter baumannii strain OCU Ac18]
ATGAAATCTAAAGGCTTTACCCTCTTAGAAGTTATGGTTGCTTTGGCAATCTTTGCAGTTGCAGCTGTCGCTTTAACTAA
AGTTGCAATGCAGTACACTCAGTCTACTTCAAATGCAATTTTGCGAACCAAAGCTCAATTTGTAGCAATGAATGAAGTTG
CTATGATGGAGATTAATCAAGAATGGTTGCAAGGAACCCAGAGTAAGCAAGTAACTTCCCAAGGTGAAACTTGGCAAATT
GATAAGTCAGCTCAATCTACTATTAGCCCGAATGTTCAAAAAATTGATTTACAAGTGAGTTTGTATGATCCGGATAAGGG
AAAAGTACAAAATGGCATTACACATATGGTCTTTTTTAATTATCCAGTGAAAGCAAAATAA
ATGAAATCTAAAGGCTTTACCCTCTTAGAAGTTATGGTTGCTTTGGCAATCTTTGCAGTTGCAGCTGTCGCTTTAACTAA
AGTTGCAATGCAGTACACTCAGTCTACTTCAAATGCAATTTTGCGAACCAAAGCTCAATTTGTAGCAATGAATGAAGTTG
CTATGATGGAGATTAATCAAGAATGGTTGCAAGGAACCCAGAGTAAGCAAGTAACTTCCCAAGGTGAAACTTGGCAAATT
GATAAGTCAGCTCAATCTACTATTAGCCCGAATGTTCAAAAAATTGATTTACAAGTGAGTTTGTATGATCCGGATAAGGG
AAAAGTACAAAATGGCATTACACATATGGTCTTTTTTAATTATCCAGTGAAAGCAAAATAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| xcpV | Acinetobacter baumannii D1279779 |
100 |
100 |
1 |