Detailed information    

insolico Bioinformatically predicted

Overview

Name   abrB   Type   Regulator
Locus tag   RNZ43_RS00250 Genome accession   NZ_CP135143
Coordinates   45682..45972 (-) Length   96 a.a.
NCBI ID   WP_169510469.1    Uniprot ID   -
Organism   Bacillus velezensis strain L33a     
Function   repression of comK; repression of rok (predicted from homology)   
Competence regulation

Genomic Context

Location: 40682..50972
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RNZ43_RS00210 darA 40699..41028 (+) 330 WP_004264734.1 cyclic di-AMP receptor DarA -
  RNZ43_RS00215 - 41041..41481 (+) 441 WP_004264730.1 YaaR family protein -
  RNZ43_RS00220 holB 41493..42482 (+) 990 WP_128574753.1 DNA polymerase III subunit delta' -
  RNZ43_RS00225 ricT 42485..43312 (+) 828 WP_004264723.1 competence/sporulation regulator complex protein RicT -
  RNZ43_RS00230 yabA 43327..43686 (+) 360 WP_004264720.1 replication initiation-control protein YabA -
  RNZ43_RS00235 - 43747..44490 (+) 744 WP_077721687.1 tRNA1(Val) (adenine(37)-N6)-methyltransferase -
  RNZ43_RS00240 - 44477..44776 (+) 300 WP_416405995.1 GIY-YIG nuclease family protein -
  RNZ43_RS00245 rsmI 44751..45632 (+) 882 WP_070081259.1 16S rRNA (cytidine(1402)-2'-O)-methyltransferase -
  RNZ43_RS00250 abrB 45682..45972 (-) 291 WP_169510469.1 transition state genes transcriptional regulator AbrB Regulator
  RNZ43_RS00255 metG 46455..48446 (+) 1992 WP_053573816.1 methionine--tRNA ligase -
  RNZ43_RS00260 - 48522..49289 (+) 768 WP_025854081.1 TatD family hydrolase -
  RNZ43_RS00265 - 49424..50749 (+) 1326 WP_095324173.1 G5 and 3D domain-containing protein -

Sequence

Protein


Download         Length: 96 a.a.        Molecular weight: 10753.57 Da        Isoelectric Point: 6.3482

>NTDB_id=885556 RNZ43_RS00250 WP_169510469.1 45682..45972(-) (abrB) [Bacillus velezensis strain L33a]
MLMKSTGIVRKVDELGRVVIPIELRRTLGIAEKDALEIYVDDEKIILKKYKPNMTCQVTGEVSDDNLKLAGGKLVLSKEG
AEQIISEIQNQLQNQK

Nucleotide


Download         Length: 291 bp        

>NTDB_id=885556 RNZ43_RS00250 WP_169510469.1 45682..45972(-) (abrB) [Bacillus velezensis strain L33a]
CTGTTAATGAAATCTACTGGTATCGTACGTAAAGTTGATGAACTTGGACGCGTCGTTATCCCTATCGAACTTCGCCGTAC
ACTGGGCATCGCAGAAAAAGACGCTCTTGAAATTTATGTTGATGATGAAAAAATCATCCTTAAAAAATATAAACCAAACA
TGACTTGCCAAGTAACTGGTGAAGTTTCTGATGATAACCTTAAACTTGCCGGCGGCAAATTGGTACTCAGCAAAGAAGGC
GCTGAGCAAATCATCTCTGAAATTCAAAACCAGCTTCAAAACCAAAAATAA

Domains

Predicted by InterproScan.

AbrB C-terminal domain (AbrB_C)

(55-90)

Antidote-toxin recognition MazE, bacterial antitoxin (MazE_antitoxin)

(10-52)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  abrB Bacillus subtilis subsp. subtilis str. 168

97.917

100

0.979