Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   RPB40_RS07900 Genome accession   NZ_CP135117
Coordinates   1689901..1690527 (+) Length   208 a.a.
NCBI ID   WP_017384804.1    Uniprot ID   A0AA37AJW2
Organism   Enterobacter hormaechei strain F2     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 1684901..1695527
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RPB40_RS07880 (RPB40_07880) - 1685300..1687060 (-) 1761 WP_017384808.1 Lon protease family protein -
  RPB40_RS07885 (RPB40_07885) matP 1687247..1687699 (+) 453 WP_006809347.1 macrodomain Ter protein MatP -
  RPB40_RS07890 (RPB40_07890) ompA 1687765..1688817 (-) 1053 WP_017694761.1 porin OmpA -
  RPB40_RS07895 (RPB40_07895) sulA 1689174..1689683 (-) 510 WP_032104231.1 SOS-induced cell division inhibitor SulA -
  RPB40_RS07900 (RPB40_07900) sxy/tfoX 1689901..1690527 (+) 627 WP_017384804.1 TfoX/Sxy family DNA transformation protein Regulator
  RPB40_RS07905 (RPB40_07905) yccS 1690484..1692646 (-) 2163 WP_015570895.1 YccS family putative transporter -
  RPB40_RS07910 (RPB40_07910) - 1692665..1693111 (-) 447 WP_003858149.1 YccF domain-containing protein -
  RPB40_RS07915 (RPB40_07915) helD 1693234..1695288 (+) 2055 WP_023296275.1 DNA helicase IV -

Sequence

Protein


Download         Length: 208 a.a.        Molecular weight: 24018.63 Da        Isoelectric Point: 9.4592

>NTDB_id=885456 RPB40_RS07900 WP_017384804.1 1689901..1690527(+) (sxy/tfoX) [Enterobacter hormaechei strain F2]
MKKISYDRIYQSQEYLSPLGEIHHRALFGGYTLAVDEAVFAMVSDGELYLRACEQSAKYCVKNASSFLTLMKRGRPVLLN
YYRVDEGLWQNREKLLQLSSFALDAARKERYQRHQRNRLKDLPNLTFQIEVLLMEAGITNEETLRQLGAKTSWLKMRSKN
KALSIRVLFALEGAIEGLHEAALPADIRRELMEWFNALPESQGHHSAR

Nucleotide


Download         Length: 627 bp        

>NTDB_id=885456 RPB40_RS07900 WP_017384804.1 1689901..1690527(+) (sxy/tfoX) [Enterobacter hormaechei strain F2]
ATGAAAAAGATATCTTATGATCGGATTTATCAATCTCAAGAATACCTCTCTCCGCTGGGCGAAATTCATCATCGCGCCCT
GTTTGGCGGTTATACCCTGGCCGTGGATGAAGCGGTGTTCGCGATGGTGTCTGACGGCGAGCTGTACCTTCGCGCCTGTG
AGCAAAGTGCAAAATACTGTGTAAAAAACGCCTCCTCTTTTCTGACACTGATGAAACGAGGACGGCCAGTGCTGCTTAAT
TACTACCGTGTGGATGAAGGTCTGTGGCAAAACAGGGAAAAGCTGCTTCAGCTCTCCTCGTTTGCGCTCGATGCCGCCAG
GAAAGAGCGCTACCAGCGCCATCAGCGTAATCGGCTTAAGGATCTGCCGAACCTGACCTTTCAGATTGAGGTCCTGCTTA
TGGAGGCGGGCATTACCAATGAAGAGACGCTACGACAGTTGGGGGCGAAGACGAGCTGGCTGAAAATGCGCTCTAAGAAT
AAAGCGCTGAGTATCCGGGTATTGTTCGCGCTTGAAGGCGCCATCGAAGGGTTACATGAAGCGGCACTCCCGGCGGATAT
TCGCCGGGAGCTTATGGAGTGGTTTAATGCGCTGCCTGAGTCGCAGGGCCATCATTCCGCCAGGTAG

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

58.911

97.115

0.572