Detailed information    

insolico Bioinformatically predicted

Overview

Name   priA   Type   Machinery gene
Locus tag   OCUAc18_RS01880 Genome accession   NZ_AP024802
Coordinates   394981..397209 (-) Length   742 a.a.
NCBI ID   WP_000156643.1    Uniprot ID   A0A0N8XH71
Organism   Acinetobacter baumannii strain OCU Ac18     
Function   DNA puliing through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 389981..402209
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OCUAc18_RS01860 (OCUAc18_03520) - 390166..391122 (-) 957 WP_123785555.1 DnaJ C-terminal domain-containing protein -
  OCUAc18_RS01865 (OCUAc18_03530) - 391273..391884 (-) 612 WP_001105722.1 LysE family translocator -
  OCUAc18_RS01870 (OCUAc18_03540) - 392022..392897 (-) 876 WP_001281765.1 Hsp33 family molecular chaperone HslO -
  OCUAc18_RS01875 (OCUAc18_03550) - 393063..394904 (-) 1842 WP_221255386.1 monovalent cation:proton antiporter-2 (CPA2) family protein -
  OCUAc18_RS01880 (OCUAc18_03560) priA 394981..397209 (-) 2229 WP_000156643.1 primosomal protein N' Machinery gene
  OCUAc18_RS01885 (OCUAc18_03570) gspF 397358..398563 (+) 1206 WP_001112089.1 type II secretion system inner membrane protein GspF -
  OCUAc18_RS01890 (OCUAc18_03580) gspG 398587..399168 (+) 582 WP_000865314.1 type II secretion system major pseudopilin GspG -
  OCUAc18_RS01895 (OCUAc18_03590) - 399435..399779 (+) 345 WP_000643174.1 hypothetical protein -
  OCUAc18_RS01900 (OCUAc18_03600) - 399923..400261 (+) 339 WP_000434938.1 tRNA-binding protein -
  OCUAc18_RS01905 (OCUAc18_03610) lnt 400263..401822 (-) 1560 WP_221255387.1 apolipoprotein N-acyltransferase -

Sequence

Protein


Download         Length: 742 a.a.        Molecular weight: 83908.70 Da        Isoelectric Point: 8.4655

>NTDB_id=88543 OCUAc18_RS01880 WP_000156643.1 394981..397209(-) (priA) [Acinetobacter baumannii strain OCU Ac18]
MTITPKPDSVVYRVRVAVPVHLYDTFDYTLTKAQYERAQVGSRVAISFGRQNLIGIITEKVDPQESFTGHFQLKAISELL
DDEPILDEQVLNLLTWSAQYYQFPIGEVMQTALPALLRQGKPMDVLFHLWKIIPCDNAEALLKRSIKQQDAYQILKLHPA
GTTENILNLSGVETATLKALQKKGLVDCTLEPHDFSPSPVQLAQMPLTLNEDQKKATQHVLNAQHQYQAFLLDGLTGSGK
TEVYLHIMHEVLKQGKQVLVLVPEIGLTPQTISRFKSRFNCDIALLHSGLNDSKRLQAWQQAQTGKASIILGTRSAIYTP
LPHLGLIILDEEHDLSYKQQEGFRYHARDVALYRGHLQGCPVLLGSATPSIDSYHLVETGKLTALQLNQRAGHALLPKMH
LIDLKIVKKQHGISQPLIEQIKNTLARKEQVLIFLNRRGYAPVLVCESCGWQANCPHCDAHFTLHTQPYSYLHCHHCGTV
HRLPDHCPECQQKSLKTLGAGTAKVEEHLQELFPDHDVIRVDRDSTSRVGSWQKIYDRIQQNKPSILLGTQMLAKGHHFP
HVTLVAILDIDAGLLSVDIRAPERTAQLIVQVAGRAGRGEHKGHVYLQTLRPDHPLLTTLIEKDYRAVAKQTLAERKVAL
LPPYRYAVLIRAESKDRDYTLHFLNEAAEQLRQIAGDIVDIWGPIPAPMERKAGRYRAHMVILSADRARLHFYLRQWWAQ
LVHAPRQHQLRLSIDVDPQEFS

Nucleotide


Download         Length: 2229 bp        

>NTDB_id=88543 OCUAc18_RS01880 WP_000156643.1 394981..397209(-) (priA) [Acinetobacter baumannii strain OCU Ac18]
ATGACCATAACGCCAAAGCCTGATTCAGTTGTTTATCGTGTGCGTGTTGCCGTACCTGTGCATCTGTACGACACTTTTGA
CTATACACTCACCAAAGCACAATATGAACGGGCTCAAGTAGGTTCACGCGTCGCAATTTCATTTGGACGACAAAACCTGA
TTGGTATCATTACTGAAAAAGTTGACCCACAAGAATCATTTACAGGTCACTTTCAGCTTAAGGCCATTTCTGAACTTTTA
GATGATGAGCCTATTTTAGATGAACAAGTTTTAAATTTATTGACATGGTCAGCACAATATTACCAATTTCCAATTGGTGA
GGTGATGCAGACTGCTTTACCTGCGTTATTGCGTCAGGGCAAACCCATGGATGTTTTATTTCATCTATGGAAAATCATTC
CATGTGACAATGCCGAAGCTTTACTAAAACGTTCAATCAAACAGCAAGATGCTTATCAAATTTTAAAATTACATCCTGCC
GGAACCACTGAAAATATTCTCAATTTAAGTGGTGTAGAAACTGCAACACTTAAAGCACTACAAAAGAAAGGTCTCGTAGA
CTGTACGCTTGAGCCTCATGACTTTAGTCCATCCCCTGTGCAATTGGCGCAAATGCCACTCACGCTCAATGAAGACCAAA
AGAAGGCCACTCAGCACGTCCTTAATGCACAGCATCAATATCAAGCGTTTTTGTTGGATGGTTTAACTGGAAGTGGTAAA
ACTGAAGTTTATTTGCACATCATGCATGAGGTGTTAAAGCAAGGTAAGCAAGTACTGGTGTTAGTTCCCGAAATTGGTTT
AACCCCTCAAACCATTTCGCGCTTTAAGTCTCGTTTTAACTGCGACATTGCTTTATTACATTCAGGCTTAAATGACTCTA
AACGCCTACAAGCATGGCAACAAGCACAGACTGGAAAGGCCTCTATTATTTTAGGAACACGTTCAGCCATTTATACCCCG
CTGCCACATTTGGGCCTTATCATTTTAGATGAAGAACATGACCTTTCTTATAAGCAACAAGAAGGTTTCCGTTACCATGC
ACGTGATGTCGCGCTTTATCGAGGACATTTACAAGGCTGTCCTGTTCTTTTAGGTTCAGCAACCCCAAGCATTGACAGTT
ATCACTTAGTCGAAACTGGCAAGTTAACTGCGCTTCAGCTGAACCAACGTGCAGGCCATGCGCTTTTACCAAAAATGCAT
TTGATTGATCTTAAAATTGTCAAAAAACAGCATGGTATTAGTCAGCCTTTAATCGAACAGATTAAAAATACCTTAGCAAG
AAAAGAACAAGTTTTAATTTTTTTAAACCGACGTGGTTATGCACCTGTTCTGGTCTGTGAAAGTTGTGGTTGGCAAGCGA
ATTGTCCGCATTGTGATGCGCATTTTACGTTGCACACTCAGCCTTATTCTTACTTACATTGCCACCACTGTGGCACAGTT
CATCGCTTGCCAGACCACTGCCCTGAGTGTCAGCAAAAAAGCCTCAAAACTTTAGGTGCTGGCACAGCCAAGGTTGAAGA
GCATTTACAAGAATTATTCCCAGATCATGATGTGATTCGGGTCGATCGTGACAGCACCAGCCGAGTCGGTAGCTGGCAAA
AAATTTATGATCGCATTCAACAAAATAAACCTTCGATTTTGCTCGGTACTCAAATGTTGGCAAAAGGTCACCATTTTCCG
CATGTGACCCTAGTTGCTATTTTAGACATCGATGCAGGTTTACTCAGTGTCGATATTCGGGCGCCAGAACGTACTGCACA
GTTGATTGTACAAGTCGCTGGTCGTGCAGGTCGTGGAGAACACAAAGGCCATGTTTATTTACAGACTTTAAGGCCGGATC
ACCCTTTACTTACCACACTCATCGAAAAAGATTATCGTGCGGTTGCCAAACAAACGCTGGCTGAACGTAAAGTTGCTTTA
CTCCCCCCTTATCGTTATGCAGTCTTAATTCGTGCTGAGTCAAAAGATCGTGACTATACCTTGCATTTTTTAAATGAAGC
TGCCGAGCAACTTCGCCAAATTGCAGGTGACATTGTTGATATCTGGGGGCCAATTCCAGCGCCAATGGAACGTAAAGCGG
GACGTTACCGCGCACATATGGTGATTTTGTCTGCTGACCGCGCTCGTCTGCATTTTTACTTAAGACAATGGTGGGCTCAG
TTGGTTCATGCGCCAAGACAGCATCAACTCAGACTCTCAATTGATGTTGACCCGCAAGAATTTAGTTAG

Domains

Predicted by InterproScan.

Primosomal protein N C-terminal domain (PriA_C)

(643-738)

Type III restriction enzyme, res subunit (ResIII)

(208-369)

3DNA-binding domain (3BD) (PriA_3primeBD)

(15-114)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0N8XH71

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  priA Acinetobacter baumannii D1279779

98.113

100

0.981

Multiple sequence alignment