Detailed information    

insolico Bioinformatically predicted

Overview

Name   hns   Type   Regulator
Locus tag   OCUAc17_RS17665 Genome accession   NZ_AP024798
Coordinates   3711787..3712113 (-) Length   108 a.a.
NCBI ID   WP_002121134.1    Uniprot ID   -
Organism   Acinetobacter pittii strain OCU Ac17     
Function   repress the expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 3706787..3717113
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OCUAc17_RS17645 (OCUAc17_34420) - 3706888..3707514 (-) 627 WP_005804102.1 FHA domain-containing protein -
  OCUAc17_RS17650 (OCUAc17_34430) gspD 3707555..3709831 (-) 2277 WP_002121232.1 type II secretion system secretin GspD -
  OCUAc17_RS17655 (OCUAc17_34440) - 3709873..3710709 (-) 837 WP_005079413.1 type II secretion system protein N -
  OCUAc17_RS17660 (OCUAc17_34450) gspN 3710709..3711452 (-) 744 WP_002121195.1 type II secretion system protein N -
  OCUAc17_RS17665 (OCUAc17_34460) hns 3711787..3712113 (-) 327 WP_002121134.1 H-NS histone family protein Regulator
  OCUAc17_RS17670 (OCUAc17_34470) - 3712308..3712748 (-) 441 WP_002121251.1 thioesterase family protein -
  OCUAc17_RS17675 (OCUAc17_34480) - 3712756..3713949 (-) 1194 WP_221255049.1 heme biosynthesis protein HemY -
  OCUAc17_RS17680 (OCUAc17_34490) - 3713959..3714801 (-) 843 WP_002121187.1 hypothetical protein -
  OCUAc17_RS17685 (OCUAc17_34500) hemD 3714810..3715577 (-) 768 WP_002121177.1 uroporphyrinogen-III synthase -
  OCUAc17_RS17690 (OCUAc17_34510) hemC 3715581..3716498 (-) 918 WP_057082133.1 hydroxymethylbilane synthase -

Sequence

Protein


Download         Length: 108 a.a.        Molecular weight: 12492.15 Da        Isoelectric Point: 5.0524

>NTDB_id=88523 OCUAc17_RS17665 WP_002121134.1 3711787..3712113(-) (hns) [Acinetobacter pittii strain OCU Ac17]
MKPDISELSVEELKRLQEEAEALIASKKDQAIEDAYNQIIEIAENVGFSVEQLLEFGTQKRKKTTRKSVEPRYRNKNNAE
ETWTGRGKQPRWLVAEIEKGAKLEDFLI

Nucleotide


Download         Length: 327 bp        

>NTDB_id=88523 OCUAc17_RS17665 WP_002121134.1 3711787..3712113(-) (hns) [Acinetobacter pittii strain OCU Ac17]
ATGAAACCGGATATCAGTGAATTATCTGTTGAAGAGTTAAAACGCTTACAAGAAGAAGCAGAAGCTTTAATTGCAAGTAA
AAAAGATCAAGCAATCGAAGATGCTTATAATCAAATTATCGAGATTGCTGAAAATGTAGGTTTCAGTGTTGAACAACTTC
TTGAGTTTGGTACTCAAAAACGTAAGAAAACAACTCGTAAATCTGTTGAGCCTCGTTACCGCAACAAAAACAATGCTGAA
GAGACTTGGACTGGTCGCGGTAAACAACCACGCTGGTTAGTTGCTGAAATTGAAAAAGGCGCAAAACTTGAAGATTTCTT
AATCTAA

Domains

Predicted by InterproScan.

H-NS histone family (Histone_HNS)

(12-102)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  hns Acinetobacter baumannii strain A118

99.074

100

0.991

Multiple sequence alignment