Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilV   Type   Machinery gene
Locus tag   RPM50_RS13745 Genome accession   NZ_CP135099
Coordinates   2994665..2995189 (+) Length   174 a.a.
NCBI ID   WP_003116261.1    Uniprot ID   Q7WZP2
Organism   Pseudomonas aeruginosa strain Paer3125     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2989665..3000189
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RPM50_RS13725 (RPM50_13725) pilR 2990927..2992264 (+) 1338 WP_003110427.1 two-component system response regulator PilR Regulator
  RPM50_RS13730 (RPM50_13730) thiO 2992310..2993404 (-) 1095 WP_033991130.1 glycine oxidase ThiO -
  RPM50_RS13735 (RPM50_13735) - 2993544..2994044 (+) 501 WP_016562346.1 GspH/FimT family pseudopilin -
  RPM50_RS13740 (RPM50_13740) - 2994167..2994655 (+) 489 WP_003141552.1 GspH/FimT family pseudopilin -
  RPM50_RS13745 (RPM50_13745) pilV 2994665..2995189 (+) 525 WP_003116261.1 type IV pilus modification protein PilV Machinery gene
  RPM50_RS13750 (RPM50_13750) - 2995198..2996013 (+) 816 WP_016254061.1 PilW family protein -
  RPM50_RS13755 (RPM50_13755) - 2996010..2996615 (+) 606 WP_003116263.1 PilX N-terminal domain-containing pilus assembly protein -
  RPM50_RS13760 (RPM50_13760) - 2996629..3000105 (+) 3477 WP_023100239.1 pilus assembly protein -

Sequence

Protein


Download         Length: 174 a.a.        Molecular weight: 18763.51 Da        Isoelectric Point: 4.9113

>NTDB_id=885226 RPM50_RS13745 WP_003116261.1 2994665..2995189(+) (pilV) [Pseudomonas aeruginosa strain Paer3125]
MSRETGFSMIEVLVALVLISIGVLGMVAMQGRTIQYTQESVQRNAAAMLASDLMEIMRADPDAVLNLRAQLREDSVYYKA
KGSDFPAAPARCAPLPADAKERLGCWAQQASKDLPGASALLNSQFYICRSPTPGTCDNTKGSAIEIQVAWRAMDGACFNA
SDSTLCTYSVRSEL

Nucleotide


Download         Length: 525 bp        

>NTDB_id=885226 RPM50_RS13745 WP_003116261.1 2994665..2995189(+) (pilV) [Pseudomonas aeruginosa strain Paer3125]
ATGTCTCGAGAAACGGGTTTCAGCATGATCGAAGTACTGGTTGCTCTGGTGCTGATCAGCATTGGCGTACTGGGCATGGT
TGCCATGCAAGGGCGCACGATCCAGTACACGCAGGAGTCGGTACAACGCAATGCCGCAGCAATGCTTGCTAGCGACCTGA
TGGAAATAATGCGTGCGGACCCAGATGCCGTACTCAATCTACGCGCCCAACTACGCGAAGACTCGGTCTACTACAAGGCC
AAGGGCAGCGACTTTCCCGCAGCCCCAGCGCGCTGCGCGCCATTGCCAGCAGATGCTAAGGAACGTCTCGGCTGCTGGGC
CCAACAGGCCTCGAAAGACTTGCCGGGAGCCTCCGCACTCTTGAATAGCCAATTCTACATTTGTCGCAGCCCAACCCCGG
GTACCTGCGACAACACCAAAGGCTCGGCCATCGAAATCCAGGTTGCCTGGCGAGCCATGGATGGAGCGTGTTTCAACGCC
TCTGACTCCACCTTGTGCACCTACAGCGTCCGCTCCGAATTGTGA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(1-26)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q7WZP2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilV Pseudomonas aeruginosa PAK

59.429

100

0.598