Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilV   Type   Machinery gene
Locus tag   RPM47_RS01935 Genome accession   NZ_CP135098
Coordinates   402478..403035 (+) Length   185 a.a.
NCBI ID   WP_003119423.1    Uniprot ID   -
Organism   Pseudomonas aeruginosa strain Paer2090     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 397478..408035
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RPM47_RS01915 (RPM47_01915) pilR 398754..400091 (+) 1338 WP_003094694.1 two-component system response regulator PilR Regulator
  RPM47_RS01920 (RPM47_01920) thiO 400137..401231 (-) 1095 WP_023084775.1 glycine oxidase ThiO -
  RPM47_RS01925 (RPM47_01925) - 401366..401875 (+) 510 WP_003161431.1 Tfp pilus assembly protein FimT/FimU -
  RPM47_RS01930 (RPM47_01930) - 401981..402487 (+) 507 WP_003102598.1 Tfp pilus assembly protein FimT/FimU -
  RPM47_RS01935 (RPM47_01935) pilV 402478..403035 (+) 558 WP_003119423.1 type 4a pilus minor pilin PilV Machinery gene
  RPM47_RS01940 (RPM47_01940) pilW 403032..403856 (+) 825 WP_003119422.1 type 4a pilus minor pilin PilW -
  RPM47_RS01945 (RPM47_01945) pilX 403853..404440 (+) 588 WP_003112826.1 type 4a pilus minor pilin PilX -
  RPM47_RS01950 (RPM47_01950) pilY1 404452..407943 (+) 3492 WP_003102607.1 type 4a pilus biogenesis protein PilY1 -

Sequence

Protein


Download         Length: 185 a.a.        Molecular weight: 20061.15 Da        Isoelectric Point: 8.2255

>NTDB_id=885186 RPM47_RS01935 WP_003119423.1 402478..403035(+) (pilV) [Pseudomonas aeruginosa strain Paer2090]
MLLKSRHRSLHQSGFSMIEVLVALLLISIGVLGMIAMQGKTIQYTADSVERNKAAMLGSNLLESMRASPKALYDVKDQMA
TQSDFFKAKGSAFPTAPSSCTPLPDAIKDRLGCWAEQVKNELPGAGDLLKSDYYICRSSKPGDCDGKGSMLEIRLAWRGK
QGACVNAADSSADTSLCYYTLRVEP

Nucleotide


Download         Length: 558 bp        

>NTDB_id=885186 RPM47_RS01935 WP_003119423.1 402478..403035(+) (pilV) [Pseudomonas aeruginosa strain Paer2090]
ATGCTATTGAAATCGCGACACAGGTCGCTGCACCAATCCGGCTTCAGCATGATCGAAGTGCTGGTCGCCCTGCTGCTGAT
CAGCATCGGCGTGCTGGGCATGATCGCCATGCAGGGCAAGACCATCCAGTACACCGCCGACTCGGTCGAGCGCAACAAGG
CAGCCATGCTCGGCAGCAACCTGCTGGAAAGCATGCGGGCGAGCCCGAAGGCGCTGTACGACGTCAAGGACCAGATGGCC
ACGCAATCCGACTTCTTCAAGGCCAAGGGGTCGGCGTTCCCCACCGCGCCGTCCTCCTGCACGCCATTGCCCGACGCGAT
CAAGGACCGCCTGGGATGCTGGGCGGAACAGGTGAAGAACGAACTGCCAGGCGCTGGCGACCTGCTGAAGAGCGACTACT
ACATCTGCCGCAGCTCGAAGCCGGGCGACTGCGACGGCAAGGGCTCCATGCTGGAAATCCGCCTTGCCTGGCGCGGCAAG
CAAGGCGCCTGCGTCAACGCCGCCGACAGCAGCGCCGACACCTCCCTCTGCTACTACACCCTCAGGGTCGAGCCATGA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(11-34)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilV Pseudomonas aeruginosa PAK

99.459

100

0.995