Detailed information    

insolico Bioinformatically predicted

Overview

Name   exbB   Type   Machinery gene
Locus tag   RPM46_RS16325 Genome accession   NZ_CP135096
Coordinates   3512043..3512678 (+) Length   211 a.a.
NCBI ID   WP_003091163.1    Uniprot ID   A0A0H2ZBU7
Organism   Pseudomonas aeruginosa strain Paer3554     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3507043..3517678
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RPM46_RS16310 (RPM46_16310) - 3507783..3508808 (+) 1026 WP_033942962.1 IS110 family transposase -
  RPM46_RS16315 (RPM46_16315) - 3509081..3509614 (-) 534 WP_003162489.1 DUF2062 domain-containing protein -
  RPM46_RS16320 (RPM46_16320) comA 3509745..3511970 (+) 2226 WP_003162490.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  RPM46_RS16325 (RPM46_16325) exbB 3512043..3512678 (+) 636 WP_003091163.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  RPM46_RS16330 (RPM46_16330) - 3512675..3513115 (+) 441 WP_003091161.1 ExbD/TolR family protein -
  RPM46_RS16335 (RPM46_16335) lpxK 3513115..3514113 (+) 999 WP_003130692.1 tetraacyldisaccharide 4'-kinase -
  RPM46_RS16340 (RPM46_16340) - 3514151..3514336 (+) 186 WP_003091157.1 Trm112 family protein -
  RPM46_RS16345 (RPM46_16345) kdsB 3514336..3515100 (+) 765 WP_003162491.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  RPM46_RS16350 (RPM46_16350) - 3515100..3515564 (+) 465 WP_003162492.1 low molecular weight protein-tyrosine-phosphatase -
  RPM46_RS16355 (RPM46_16355) murB 3515561..3516580 (+) 1020 WP_003091153.1 UDP-N-acetylmuramate dehydrogenase -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 22890.06 Da        Isoelectric Point: 6.7278

>NTDB_id=885170 RPM46_RS16325 WP_003091163.1 3512043..3512678(+) (exbB) [Pseudomonas aeruginosa strain Paer3554]
MWELVQAGGWMMLPIILSSIAATAIVAERLWTLRKSRVAPPELLGQVWKQIKGKQLSAQKLKDLRANSPLGEILAAGLAN
SKHGREIMKECIEEAASGVIHELERYLNALGTIAAMAPLLGLLGTVFGMIQIFGAFMDNGMANSPMLAAGISKALITTAA
GLLVAIPAVFFHRYLLRRVDELVIAMEQEAIKLVEVVQGDREVDYVEEGKA

Nucleotide


Download         Length: 636 bp        

>NTDB_id=885170 RPM46_RS16325 WP_003091163.1 3512043..3512678(+) (exbB) [Pseudomonas aeruginosa strain Paer3554]
GTGTGGGAACTGGTTCAAGCCGGCGGCTGGATGATGCTGCCGATCATTCTGAGTTCGATCGCCGCCACCGCCATCGTCGC
GGAGCGCCTGTGGACGCTGCGCAAGAGCCGCGTCGCGCCGCCCGAGCTGCTCGGCCAGGTGTGGAAGCAGATCAAGGGCA
AGCAACTGAGCGCCCAGAAGCTCAAGGACCTGCGCGCCAACTCGCCGCTGGGAGAGATCCTCGCCGCCGGCCTGGCCAAC
TCCAAGCACGGTCGCGAGATCATGAAGGAGTGCATCGAGGAGGCTGCTTCCGGTGTCATCCACGAGCTGGAGCGCTACCT
CAACGCCCTCGGCACCATCGCCGCGATGGCGCCGCTGCTGGGCCTGCTGGGCACGGTGTTCGGCATGATCCAGATCTTCG
GCGCCTTCATGGACAACGGCATGGCCAACTCGCCGATGCTCGCCGCGGGCATCTCCAAGGCATTGATCACCACCGCCGCC
GGCCTGCTGGTGGCGATTCCGGCGGTGTTCTTCCATCGCTACCTGCTGCGGCGGGTCGACGAACTGGTGATCGCCATGGA
GCAGGAGGCCATCAAGCTGGTGGAAGTGGTGCAGGGCGATCGTGAAGTCGACTACGTCGAGGAAGGCAAAGCGTGA

Domains

Predicted by InterproScan.

MotA/TolQ/ExbB proton channel family (MotA_ExbB)

(66-188)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0H2ZBU7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  exbB Pseudomonas stutzeri DSM 10701

81.043

100

0.81