Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilV   Type   Machinery gene
Locus tag   RPM48_RS20020 Genome accession   NZ_CP135095
Coordinates   4250041..4250598 (+) Length   185 a.a.
NCBI ID   WP_003094697.1    Uniprot ID   A0A6N0KGD7
Organism   Pseudomonas aeruginosa strain Paer3771     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4245041..4255598
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RPM48_RS20000 (RPM48_20000) pilR 4246317..4247654 (+) 1338 WP_003094694.1 two-component system response regulator PilR Regulator
  RPM48_RS20005 (RPM48_20005) thiO 4247700..4248794 (-) 1095 WP_003094695.1 glycine oxidase ThiO -
  RPM48_RS20010 (RPM48_20010) - 4248929..4249438 (+) 510 WP_015503652.1 Tfp pilus assembly protein FimT/FimU -
  RPM48_RS20015 (RPM48_20015) - 4249544..4250050 (+) 507 WP_003094696.1 Tfp pilus assembly protein FimT/FimU -
  RPM48_RS20020 (RPM48_20020) pilV 4250041..4250598 (+) 558 WP_003094697.1 type 4a pilus minor pilin PilV Machinery gene
  RPM48_RS20025 (RPM48_20025) pilW 4250595..4251419 (+) 825 WP_003094698.1 type 4a pilus minor pilin PilW -
  RPM48_RS20030 (RPM48_20030) pilX 4251416..4252003 (+) 588 WP_003094700.1 type 4a pilus minor pilin PilX -
  RPM48_RS20035 (RPM48_20035) pilY1 4252015..4255506 (+) 3492 WP_003094704.1 type 4a pilus biogenesis protein PilY1 -

Sequence

Protein


Download         Length: 185 a.a.        Molecular weight: 20069.21 Da        Isoelectric Point: 8.2164

>NTDB_id=885132 RPM48_RS20020 WP_003094697.1 4250041..4250598(+) (pilV) [Pseudomonas aeruginosa strain Paer3771]
MLLKSRHKPLYQSGFSMIEVLVALLLISIGVLGMIAMQGKTIQYTADSVERNKAAMLGSNLLESMRASPKALYDVKDQMA
TQSDFFKAKGSAFPTAPSSCTPLPDAIKDRLGCWAEQVKNELPGAGDLLKSDYYICRSSKPGDCDGKGSMLEIRLAWRGK
QGACVNAADSSADTSLCYYTLRVEP

Nucleotide


Download         Length: 558 bp        

>NTDB_id=885132 RPM48_RS20020 WP_003094697.1 4250041..4250598(+) (pilV) [Pseudomonas aeruginosa strain Paer3771]
ATGCTATTGAAATCGCGGCACAAGCCGCTGTACCAATCCGGCTTCAGCATGATCGAAGTGCTGGTCGCCCTGCTGCTGAT
CAGCATCGGCGTGCTGGGCATGATCGCCATGCAGGGCAAGACCATCCAGTACACCGCCGACTCGGTCGAGCGCAACAAGG
CAGCCATGCTCGGCAGCAACCTGCTGGAAAGCATGCGGGCGAGCCCGAAGGCGCTGTACGACGTCAAGGACCAGATGGCC
ACGCAATCCGACTTCTTCAAGGCCAAGGGGTCGGCGTTCCCCACCGCGCCGTCCTCCTGCACGCCATTGCCCGACGCGAT
CAAGGACCGCCTGGGATGCTGGGCGGAACAGGTGAAGAACGAACTGCCAGGCGCTGGCGACCTGCTGAAGAGCGACTACT
ACATCTGCCGCAGCTCGAAGCCGGGCGACTGCGACGGCAAGGGCTCCATGCTGGAAATCCGCCTGGCCTGGCGCGGCAAG
CAAGGCGCCTGCGTCAACGCCGCCGACAGCAGCGCCGACACCTCCCTCTGCTACTACACCCTCAGGGTCGAGCCATGA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(12-34)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A6N0KGD7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilV Pseudomonas aeruginosa PAK

97.838

100

0.978