Detailed information    

insolico Bioinformatically predicted

Overview

Name   exbB   Type   Machinery gene
Locus tag   RPM48_RS04085 Genome accession   NZ_CP135095
Coordinates   875224..875859 (+) Length   211 a.a.
NCBI ID   WP_003091163.1    Uniprot ID   A0A0H2ZBU7
Organism   Pseudomonas aeruginosa strain Paer3771     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 870224..880859
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RPM48_RS04070 (RPM48_04070) - 870930..872174 (+) 1245 WP_003091166.1 lipoprotein-releasing ABC transporter permease subunit -
  RPM48_RS04075 (RPM48_04075) - 872262..872795 (-) 534 WP_003091165.1 DUF2062 domain-containing protein -
  RPM48_RS04080 (RPM48_04080) comA 872926..875151 (+) 2226 WP_014603928.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  RPM48_RS04085 (RPM48_04085) exbB 875224..875859 (+) 636 WP_003091163.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  RPM48_RS04090 (RPM48_04090) - 875856..876296 (+) 441 WP_003091161.1 ExbD/TolR family protein -
  RPM48_RS04095 (RPM48_04095) lpxK 876296..877294 (+) 999 WP_003091159.1 tetraacyldisaccharide 4'-kinase -
  RPM48_RS04100 (RPM48_04100) - 877332..877517 (+) 186 WP_003091157.1 Trm112 family protein -
  RPM48_RS04105 (RPM48_04105) kdsB 877517..878281 (+) 765 WP_003091155.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  RPM48_RS04110 (RPM48_04110) - 878281..878745 (+) 465 WP_003091154.1 low molecular weight protein-tyrosine-phosphatase -
  RPM48_RS04115 (RPM48_04115) murB 878742..879761 (+) 1020 WP_003091153.1 UDP-N-acetylmuramate dehydrogenase -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 22890.06 Da        Isoelectric Point: 6.7278

>NTDB_id=885119 RPM48_RS04085 WP_003091163.1 875224..875859(+) (exbB) [Pseudomonas aeruginosa strain Paer3771]
MWELVQAGGWMMLPIILSSIAATAIVAERLWTLRKSRVAPPELLGQVWKQIKGKQLSAQKLKDLRANSPLGEILAAGLAN
SKHGREIMKECIEEAASGVIHELERYLNALGTIAAMAPLLGLLGTVFGMIQIFGAFMDNGMANSPMLAAGISKALITTAA
GLLVAIPAVFFHRYLLRRVDELVIAMEQEAIKLVEVVQGDREVDYVEEGKA

Nucleotide


Download         Length: 636 bp        

>NTDB_id=885119 RPM48_RS04085 WP_003091163.1 875224..875859(+) (exbB) [Pseudomonas aeruginosa strain Paer3771]
GTGTGGGAACTGGTTCAAGCCGGCGGCTGGATGATGCTGCCGATCATTCTGAGTTCGATCGCCGCCACCGCCATCGTCGC
GGAGCGCCTGTGGACGCTGCGCAAGAGCCGCGTCGCGCCGCCCGAGCTGCTCGGCCAGGTGTGGAAGCAGATCAAGGGCA
AGCAACTGAGCGCCCAGAAGCTCAAGGACCTGCGCGCCAACTCGCCGCTGGGAGAGATCCTCGCCGCCGGTCTGGCCAAC
TCCAAGCACGGTCGCGAGATCATGAAGGAGTGCATCGAGGAGGCTGCTTCCGGTGTCATCCACGAGCTGGAGCGCTACCT
CAACGCCCTCGGCACCATCGCCGCGATGGCGCCGCTGCTGGGCCTGCTGGGTACGGTGTTCGGCATGATCCAGATCTTCG
GCGCCTTCATGGACAACGGCATGGCCAACTCGCCGATGCTTGCCGCGGGCATCTCCAAGGCATTGATCACCACCGCCGCC
GGCCTGCTGGTGGCGATTCCGGCGGTGTTCTTCCATCGCTACCTGCTGCGGCGGGTCGACGAACTGGTGATCGCCATGGA
GCAGGAGGCCATCAAGCTGGTGGAAGTGGTGCAGGGCGATCGTGAAGTCGACTACGTCGAGGAAGGCAAAGCGTGA

Domains

Predicted by InterproScan.

MotA/TolQ/ExbB proton channel family (MotA_ExbB)

(66-188)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0H2ZBU7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  exbB Pseudomonas stutzeri DSM 10701

81.043

100

0.81