Detailed information
Bioinformatically predicted
Overview
| Name | radA | Type | Machinery gene |
| Locus tag | RMP66_RS09905 | Genome accession | NZ_CP135094 |
| Coordinates | 2006029..2007399 (-) | Length | 456 a.a. |
| NCBI ID | WP_004298358.1 | Uniprot ID | A0A126UJP8 |
| Organism | Streptococcus suis strain 1547095 | ||
| Function | homologous recombination (predicted from homology) Homologous recombination |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| Prophage | 2007946..2031168 | 2006029..2007399 | flank | 547 |
Gene organization within MGE regions
Location: 2006029..2031168
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| RMP66_RS09905 (RMP66_09905) | radA | 2006029..2007399 (-) | 1371 | WP_004298358.1 | DNA repair protein RadA | Machinery gene |
| RMP66_RS09910 (RMP66_09910) | - | 2007406..2007939 (-) | 534 | WP_004298356.1 | histidine phosphatase family protein | - |
| RMP66_RS09915 (RMP66_09915) | - | 2007946..2008389 (-) | 444 | WP_004298354.1 | dUTP diphosphatase | - |
| RMP66_RS09920 (RMP66_09920) | - | 2008488..2009633 (-) | 1146 | WP_043032909.1 | site-specific integrase | - |
| RMP66_RS09925 (RMP66_09925) | - | 2010060..2010644 (-) | 585 | WP_024417296.1 | helix-turn-helix transcriptional regulator | - |
| RMP66_RS09930 (RMP66_09930) | - | 2010807..2011004 (+) | 198 | WP_024417295.1 | helix-turn-helix transcriptional regulator | - |
| RMP66_RS09935 (RMP66_09935) | - | 2011022..2011180 (+) | 159 | Protein_1922 | helix-turn-helix domain-containing protein | - |
| RMP66_RS09940 (RMP66_09940) | - | 2011241..2011870 (+) | 630 | WP_043032905.1 | Rha family transcriptional regulator | - |
| RMP66_RS09945 (RMP66_09945) | - | 2012334..2012723 (+) | 390 | WP_201346262.1 | hypothetical protein | - |
| RMP66_RS09950 (RMP66_09950) | - | 2012711..2012848 (+) | 138 | WP_153601472.1 | hypothetical protein | - |
| RMP66_RS09955 (RMP66_09955) | - | 2012920..2013069 (+) | 150 | WP_014637231.1 | hypothetical protein | - |
| RMP66_RS09960 (RMP66_09960) | - | 2013066..2013404 (+) | 339 | WP_014637230.1 | hypothetical protein | - |
| RMP66_RS09965 (RMP66_09965) | - | 2013394..2013669 (+) | 276 | WP_024394567.1 | hypothetical protein | - |
| RMP66_RS09970 (RMP66_09970) | - | 2013666..2013818 (+) | 153 | WP_162841229.1 | hypothetical protein | - |
| RMP66_RS09975 (RMP66_09975) | - | 2013914..2014789 (+) | 876 | WP_043033044.1 | primase alpha helix C-terminal domain-containing protein | - |
| RMP66_RS09980 (RMP66_09980) | - | 2014807..2016279 (+) | 1473 | WP_024394565.1 | phage/plasmid primase, P4 family | - |
| RMP66_RS09985 (RMP66_09985) | - | 2016495..2016668 (+) | 174 | WP_162841090.1 | hypothetical protein | - |
| RMP66_RS09990 (RMP66_09990) | - | 2016689..2017264 (+) | 576 | WP_024394564.1 | hypothetical protein | - |
| RMP66_RS09995 (RMP66_09995) | - | 2017314..2017715 (+) | 402 | WP_024394563.1 | hypothetical protein | - |
| RMP66_RS10000 (RMP66_10000) | - | 2017767..2018270 (+) | 504 | WP_024394562.1 | hypothetical protein | - |
| RMP66_RS10005 (RMP66_10005) | - | 2018401..2018820 (+) | 420 | WP_024394561.1 | hypothetical protein | - |
| RMP66_RS10010 (RMP66_10010) | - | 2018852..2019190 (+) | 339 | WP_141604792.1 | hypothetical protein | - |
| RMP66_RS10015 (RMP66_10015) | - | 2019722..2021506 (-) | 1785 | WP_170244756.1 | ABC transporter ATP-binding protein | - |
| RMP66_RS10020 (RMP66_10020) | - | 2021507..2023213 (-) | 1707 | WP_024394878.1 | ABC transporter ATP-binding protein | - |
| RMP66_RS10025 (RMP66_10025) | - | 2023206..2023655 (-) | 450 | WP_024387360.1 | MarR family winged helix-turn-helix transcriptional regulator | - |
| RMP66_RS10030 (RMP66_10030) | - | 2023877..2024893 (+) | 1017 | WP_012027922.1 | NAD(P)H-dependent glycerol-3-phosphate dehydrogenase | - |
| RMP66_RS10035 (RMP66_10035) | galU | 2024938..2025837 (+) | 900 | WP_004298345.1 | UTP--glucose-1-phosphate uridylyltransferase GalU | - |
| RMP66_RS10040 (RMP66_10040) | - | 2025855..2026532 (-) | 678 | WP_024387359.1 | rhomboid family intramembrane serine protease | - |
| RMP66_RS10045 (RMP66_10045) | - | 2026516..2027058 (-) | 543 | WP_024387358.1 | 5-formyltetrahydrofolate cyclo-ligase | - |
| RMP66_RS10050 (RMP66_10050) | - | 2027099..2028226 (-) | 1128 | WP_024394877.1 | N-acetyldiaminopimelate deacetylase | - |
| RMP66_RS10055 (RMP66_10055) | dapD | 2028236..2028934 (-) | 699 | WP_024376132.1 | 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-acetyltransferase | - |
| RMP66_RS10060 (RMP66_10060) | - | 2029010..2029750 (-) | 741 | WP_024387356.1 | metallophosphoesterase | - |
| RMP66_RS10065 (RMP66_10065) | - | 2029912..2031168 (+) | 1257 | WP_313910484.1 | ISL3 family transposase | - |
Sequence
Protein
Download Length: 456 a.a. Molecular weight: 50002.51 Da Isoelectric Point: 6.1911
>NTDB_id=885110 RMP66_RS09905 WP_004298358.1 2006029..2007399(-) (radA) [Streptococcus suis strain 1547095]
MTIAKKKTTFVCQSCEYHSPKYLGRCPNCGSWSSFVEEVEVAEVKNERVSLTGEKTRPMKLNEVSSIQVARTKTNMEEFN
RVLGGGVVPGSLVLIGGDPGIGKSTLLLQVSTQLSTIGTVLYVSGEESAQQIKLRAERLGDIDSEFYLYAETNMQSIRTE
IEKIKPDFLIIDSIQTIMSPDISSVQGSVSQVREVTNELMQIAKTNNIATFIVGHMTKEGTLAGPRTLEHMVDTVLYFEG
ERQHTFRILRAVKNRFGSTNEIGIFEMQSQGLVEVLNPSEVFLEERLDGATGSAIVVTMEGTRPILAEVQALVTPTMFGN
AKRTTTGLDFNRASLIMAVLEKRAGLLLQNQDAYLKSAGGVKLDEPAIDLAVAVALASSYKDKPTNPQECFIGEIGLTGE
IRRVNRIEQRINEAAKLGFTKVYAPKNSLTGIKVPKEITVISVTTIGEVLQKVFNL
MTIAKKKTTFVCQSCEYHSPKYLGRCPNCGSWSSFVEEVEVAEVKNERVSLTGEKTRPMKLNEVSSIQVARTKTNMEEFN
RVLGGGVVPGSLVLIGGDPGIGKSTLLLQVSTQLSTIGTVLYVSGEESAQQIKLRAERLGDIDSEFYLYAETNMQSIRTE
IEKIKPDFLIIDSIQTIMSPDISSVQGSVSQVREVTNELMQIAKTNNIATFIVGHMTKEGTLAGPRTLEHMVDTVLYFEG
ERQHTFRILRAVKNRFGSTNEIGIFEMQSQGLVEVLNPSEVFLEERLDGATGSAIVVTMEGTRPILAEVQALVTPTMFGN
AKRTTTGLDFNRASLIMAVLEKRAGLLLQNQDAYLKSAGGVKLDEPAIDLAVAVALASSYKDKPTNPQECFIGEIGLTGE
IRRVNRIEQRINEAAKLGFTKVYAPKNSLTGIKVPKEITVISVTTIGEVLQKVFNL
Nucleotide
Download Length: 1371 bp
>NTDB_id=885110 RMP66_RS09905 WP_004298358.1 2006029..2007399(-) (radA) [Streptococcus suis strain 1547095]
ATGACCATCGCTAAGAAAAAAACAACCTTTGTCTGTCAATCCTGCGAGTACCACTCGCCCAAGTATCTGGGCCGTTGCCC
CAACTGTGGCTCCTGGTCTAGCTTTGTCGAGGAAGTGGAAGTCGCTGAAGTCAAGAACGAGCGGGTCAGTCTGACAGGTG
AGAAGACCCGTCCTATGAAGCTCAATGAAGTGTCGTCCATTCAAGTGGCCCGCACCAAGACCAATATGGAAGAGTTTAAC
CGTGTCCTTGGTGGCGGCGTGGTGCCGGGCAGTCTGGTCCTGATTGGAGGCGATCCAGGGATTGGCAAATCGACCTTGCT
CCTGCAAGTATCGACCCAACTTTCGACTATTGGCACCGTCCTCTATGTGTCGGGGGAAGAGTCTGCCCAGCAGATTAAGT
TGCGAGCGGAGCGTTTGGGCGACATTGACAGCGAGTTCTATCTCTATGCGGAGACCAATATGCAGAGCATTCGGACTGAG
ATTGAGAAAATCAAGCCAGATTTCCTGATTATCGACTCTATCCAGACCATTATGAGCCCTGACATTTCTAGCGTGCAAGG
TTCTGTCAGTCAGGTCCGTGAAGTGACCAATGAGCTTATGCAGATTGCCAAGACCAACAATATCGCAACCTTTATCGTCG
GCCACATGACCAAGGAAGGCACCCTGGCTGGACCGCGGACCTTGGAGCACATGGTAGACACCGTTCTCTATTTTGAGGGC
GAGCGTCAACACACCTTCCGTATCTTGAGGGCGGTCAAAAATCGCTTTGGCTCCACCAACGAAATCGGTATTTTTGAAAT
GCAGTCGCAGGGCTTGGTCGAAGTTCTCAATCCAAGTGAGGTCTTTCTGGAAGAGCGTCTGGACGGAGCGACTGGCTCGG
CTATTGTCGTGACCATGGAGGGCACCCGCCCTATCCTTGCCGAAGTGCAGGCTCTGGTGACCCCGACCATGTTTGGCAAT
GCCAAGCGGACCACGACAGGCTTGGATTTCAACCGTGCCAGCTTGATTATGGCGGTTTTGGAAAAACGGGCCGGTCTGCT
CCTCCAAAACCAAGATGCCTACCTTAAGTCAGCAGGCGGTGTCAAACTGGATGAGCCAGCTATTGACCTAGCGGTCGCAG
TTGCCCTTGCCTCCAGTTACAAGGACAAGCCAACCAACCCACAAGAGTGCTTTATAGGCGAGATTGGCCTGACAGGGGAA
ATCCGCCGCGTCAATCGGATTGAACAACGGATTAACGAAGCCGCCAAATTGGGCTTTACCAAGGTCTATGCCCCAAAAAA
TTCCCTGACAGGTATCAAGGTGCCCAAGGAAATCACCGTTATCAGCGTGACCACCATTGGCGAAGTCTTGCAGAAAGTAT
TCAACTTATGA
ATGACCATCGCTAAGAAAAAAACAACCTTTGTCTGTCAATCCTGCGAGTACCACTCGCCCAAGTATCTGGGCCGTTGCCC
CAACTGTGGCTCCTGGTCTAGCTTTGTCGAGGAAGTGGAAGTCGCTGAAGTCAAGAACGAGCGGGTCAGTCTGACAGGTG
AGAAGACCCGTCCTATGAAGCTCAATGAAGTGTCGTCCATTCAAGTGGCCCGCACCAAGACCAATATGGAAGAGTTTAAC
CGTGTCCTTGGTGGCGGCGTGGTGCCGGGCAGTCTGGTCCTGATTGGAGGCGATCCAGGGATTGGCAAATCGACCTTGCT
CCTGCAAGTATCGACCCAACTTTCGACTATTGGCACCGTCCTCTATGTGTCGGGGGAAGAGTCTGCCCAGCAGATTAAGT
TGCGAGCGGAGCGTTTGGGCGACATTGACAGCGAGTTCTATCTCTATGCGGAGACCAATATGCAGAGCATTCGGACTGAG
ATTGAGAAAATCAAGCCAGATTTCCTGATTATCGACTCTATCCAGACCATTATGAGCCCTGACATTTCTAGCGTGCAAGG
TTCTGTCAGTCAGGTCCGTGAAGTGACCAATGAGCTTATGCAGATTGCCAAGACCAACAATATCGCAACCTTTATCGTCG
GCCACATGACCAAGGAAGGCACCCTGGCTGGACCGCGGACCTTGGAGCACATGGTAGACACCGTTCTCTATTTTGAGGGC
GAGCGTCAACACACCTTCCGTATCTTGAGGGCGGTCAAAAATCGCTTTGGCTCCACCAACGAAATCGGTATTTTTGAAAT
GCAGTCGCAGGGCTTGGTCGAAGTTCTCAATCCAAGTGAGGTCTTTCTGGAAGAGCGTCTGGACGGAGCGACTGGCTCGG
CTATTGTCGTGACCATGGAGGGCACCCGCCCTATCCTTGCCGAAGTGCAGGCTCTGGTGACCCCGACCATGTTTGGCAAT
GCCAAGCGGACCACGACAGGCTTGGATTTCAACCGTGCCAGCTTGATTATGGCGGTTTTGGAAAAACGGGCCGGTCTGCT
CCTCCAAAACCAAGATGCCTACCTTAAGTCAGCAGGCGGTGTCAAACTGGATGAGCCAGCTATTGACCTAGCGGTCGCAG
TTGCCCTTGCCTCCAGTTACAAGGACAAGCCAACCAACCCACAAGAGTGCTTTATAGGCGAGATTGGCCTGACAGGGGAA
ATCCGCCGCGTCAATCGGATTGAACAACGGATTAACGAAGCCGCCAAATTGGGCTTTACCAAGGTCTATGCCCCAAAAAA
TTCCCTGACAGGTATCAAGGTGCCCAAGGAAATCACCGTTATCAGCGTGACCACCATTGGCGAAGTCTTGCAGAAAGTAT
TCAACTTATGA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| radA | Streptococcus mitis NCTC 12261 |
91.15 |
99.123 |
0.904 |
| radA | Streptococcus pneumoniae D39 |
90.929 |
99.123 |
0.901 |
| radA | Streptococcus pneumoniae R6 |
90.929 |
99.123 |
0.901 |
| radA | Streptococcus pneumoniae Rx1 |
90.929 |
99.123 |
0.901 |
| radA | Streptococcus pneumoniae TIGR4 |
90.929 |
99.123 |
0.901 |
| radA | Streptococcus mitis SK321 |
90.708 |
99.123 |
0.899 |
| radA | Bacillus subtilis subsp. subtilis str. 168 |
62.472 |
99.342 |
0.621 |