Detailed information    

insolico Bioinformatically predicted

Overview


Name   sepM   Type   Regulator
Locus tag   RMP66_RS07695 Genome accession   NZ_CP135094
Coordinates   1548790..1549839 (-) Length   349 a.a.
NCBI ID   WP_029174970.1    Uniprot ID   A0AB33U8X3
Organism   Streptococcus suis strain 1547095     
Function   processing of CSP (predicted from homology)   
Competence regulation

Genomic Context


Location: 1543790..1554839
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RMP66_RS07675 (RMP66_07675) nadE 1544304..1545128 (+) 825 WP_004194617.1 ammonia-dependent NAD(+) synthetase -
  RMP66_RS07680 (RMP66_07680) - 1546316..1546843 (-) 528 WP_012027591.1 VanZ family protein -
  RMP66_RS07685 (RMP66_07685) rlmN 1546840..1547952 (-) 1113 WP_029174969.1 23S rRNA (adenine(2503)-C(2))-methyltransferase RlmN -
  RMP66_RS07690 (RMP66_07690) - 1547961..1548602 (-) 642 WP_024382386.1 YutD-like domain-containing protein -
  RMP66_RS07695 (RMP66_07695) sepM 1548790..1549839 (-) 1050 WP_029174970.1 SepM family pheromone-processing serine protease Regulator
  RMP66_RS07700 (RMP66_07700) coaD 1549826..1550314 (-) 489 WP_002939048.1 pantetheine-phosphate adenylyltransferase -
  RMP66_RS07705 (RMP66_07705) rsmD 1550304..1550843 (-) 540 WP_014638485.1 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD -
  RMP66_RS07710 (RMP66_07710) - 1551142..1551864 (-) 723 WP_029174971.1 hypothetical protein -
  RMP66_RS07715 (RMP66_07715) - 1551921..1552307 (-) 387 WP_087013575.1 rhodanese-like domain-containing protein -
  RMP66_RS07720 (RMP66_07720) - 1552307..1552525 (-) 219 WP_004194736.1 YqgQ family protein -
  RMP66_RS07725 (RMP66_07725) - 1552833..1553435 (-) 603 WP_029174973.1 response regulator transcription factor -
  RMP66_RS07730 (RMP66_07730) - 1553432..1554526 (-) 1095 WP_029174974.1 sensor histidine kinase -

Sequence


Protein


Download         Length: 349 a.a.        Molecular weight: 37737.76 Da        Isoelectric Point: 4.6112

>NTDB_id=885098 RMP66_RS07695 WP_029174970.1 1548790..1549839(-) (sepM) [Streptococcus suis strain 1547095]
MKKNRKLTLIASIVLGTLLIWFAVFVRLPYYLESPGGAADIRQVLTVNNQIDQEDGSYNFTYVSVQQATALQLFAAQFDP
YTTVRSSEEMTGGADNEEYFRIARFYMETSQNMAKYQGLTLAGKEVNLDFFGVYVLALTDDSTFKKVLNIADTVVSINGK
TFESSPDLIKYVSGLEVGSDVTVGYISAGQEKSADGKIIKLSNGKNGIGITLVDHTEVQSSVPIDFQTGDIGGPSAGLMF
TLAIYTQLAESDLRDGRIIAGTGTIEQDGKVGDIGGADKKVISAAKSGASIFFVPNNPVDVEVLKKNPKAKTNYEEAKEA
AEKAGLDIEVVPVKTVQEAIDYLKKTKGE

Nucleotide


Download         Length: 1050 bp        

>NTDB_id=885098 RMP66_RS07695 WP_029174970.1 1548790..1549839(-) (sepM) [Streptococcus suis strain 1547095]
ATGAAGAAAAATAGGAAGTTAACCTTAATTGCATCTATTGTTTTAGGAACTCTTTTGATTTGGTTTGCCGTTTTTGTTCG
TCTGCCTTATTATTTGGAAAGTCCAGGTGGAGCTGCCGATATTCGTCAGGTACTAACGGTGAACAATCAAATAGACCAAG
AGGATGGCTCTTACAACTTCACCTATGTATCAGTCCAACAAGCCACAGCTTTACAACTATTCGCTGCTCAGTTTGATCCC
TATACGACAGTTCGTTCCTCTGAAGAGATGACAGGAGGGGCCGACAATGAGGAGTATTTCCGTATAGCACGGTTTTACAT
GGAAACTTCGCAAAATATGGCGAAGTATCAAGGATTGACCTTGGCAGGAAAAGAAGTCAATCTTGATTTCTTTGGTGTCT
ATGTGCTTGCCTTGACGGATGATTCAACCTTTAAAAAAGTTCTTAATATTGCCGACACTGTTGTGAGTATCAATGGAAAA
ACATTTGAGTCTTCTCCTGATTTGATTAAATATGTGAGTGGCTTGGAGGTTGGAAGTGATGTAACAGTTGGTTATATTAG
CGCTGGTCAGGAAAAATCTGCGGACGGTAAGATTATCAAATTGTCTAATGGCAAAAACGGAATAGGCATCACTCTCGTAG
ACCATACAGAGGTTCAAAGTTCGGTTCCAATTGATTTCCAAACGGGAGATATTGGTGGTCCAAGTGCTGGTCTGATGTTT
ACACTTGCCATCTATACTCAACTCGCAGAGTCTGACTTACGTGATGGTCGAATTATTGCTGGTACGGGGACTATCGAGCA
GGATGGAAAAGTAGGTGACATTGGTGGGGCTGATAAGAAGGTCATTTCGGCAGCTAAGTCAGGTGCAAGTATCTTTTTTG
TACCAAACAATCCAGTTGATGTAGAAGTTTTGAAGAAAAACCCAAAGGCTAAAACGAACTATGAAGAAGCTAAGGAAGCA
GCCGAGAAAGCAGGTCTAGATATTGAGGTAGTTCCTGTGAAAACTGTTCAAGAGGCTATTGATTATTTGAAGAAAACAAA
GGGCGAGTAA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sepM Streptococcus mutans UA159

60.807

99.427

0.605