Detailed information    

insolico Bioinformatically predicted

Overview

Name   vicX   Type   Regulator
Locus tag   RMP66_RS04070 Genome accession   NZ_CP135094
Coordinates   820066..820869 (+) Length   267 a.a.
NCBI ID   WP_009910233.1    Uniprot ID   A0A123TMP5
Organism   Streptococcus suis strain 1547095     
Function   require for competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 815066..825869
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RMP66_RS04045 (RMP66_04045) - 815495..816193 (-) 699 WP_013730248.1 amino acid ABC transporter permease -
  RMP66_RS04050 (RMP66_04050) - 816208..817047 (-) 840 WP_002935837.1 transporter substrate-binding domain-containing protein -
  RMP66_RS04055 (RMP66_04055) - 817058..817819 (-) 762 WP_002935839.1 amino acid ABC transporter ATP-binding protein -
  RMP66_RS04060 (RMP66_04060) micA 818013..818717 (+) 705 WP_004298854.1 response regulator YycF Regulator
  RMP66_RS04065 (RMP66_04065) micB 818710..820059 (+) 1350 WP_009910235.1 cell wall metabolism sensor histidine kinase VicK Regulator
  RMP66_RS04070 (RMP66_04070) vicX 820066..820869 (+) 804 WP_009910233.1 MBL fold metallo-hydrolase Regulator
  RMP66_RS04075 (RMP66_04075) - 821430..821879 (+) 450 WP_043032937.1 ATP-binding cassette domain-containing protein -
  RMP66_RS04080 (RMP66_04080) pbp2b 821971..824046 (+) 2076 WP_024394417.1 penicillin-binding protein PBP2B -
  RMP66_RS04085 (RMP66_04085) recR 824055..824651 (+) 597 WP_002935848.1 recombination mediator RecR -
  RMP66_RS04090 (RMP66_04090) - 824756..825802 (+) 1047 WP_024394416.1 D-alanine--D-alanine ligase -

Sequence

Protein


Download         Length: 267 a.a.        Molecular weight: 29645.73 Da        Isoelectric Point: 5.7755

>NTDB_id=885086 RMP66_RS04070 WP_009910233.1 820066..820869(+) (vicX) [Streptococcus suis strain 1547095]
MIGKGFNYSILASGSSGNCFYLETDKKKILVDAGLSGKKVTSLLAEIDRKPEDIDAILVTHEHSDHIHGIGVLARKYGMD
IYANELTWQAMESKLGKIDVAQKHIFELGAMKTFGDLDIESFGVSHDAACPQFYRFMKDDKSFVMLTDTGYVSDRMVGIV
ENADAYLIESNHDIEILRSGSYSWNLKQRILSDKGHLCNEDGADAMIRSLGNRTKKIYLGHLSKENNIKELAHMTMVNQL
AQADLGVGVDFQVYDTSPDTATPLTKI

Nucleotide


Download         Length: 804 bp        

>NTDB_id=885086 RMP66_RS04070 WP_009910233.1 820066..820869(+) (vicX) [Streptococcus suis strain 1547095]
ATGATCGGAAAAGGTTTTAATTATAGTATTTTAGCTTCGGGGTCCAGCGGGAATTGTTTTTACCTAGAAACAGATAAAAA
GAAAATTTTAGTGGATGCTGGCTTATCAGGGAAAAAGGTTACCAGTCTTTTGGCGGAAATTGATCGAAAGCCTGAGGATA
TTGATGCTATCCTGGTAACGCATGAACATAGCGATCACATCCATGGTATCGGTGTTTTAGCACGTAAGTATGGCATGGAT
ATTTATGCCAATGAATTGACCTGGCAGGCTATGGAGAGCAAATTGGGCAAGATTGATGTGGCTCAAAAACATATCTTCGA
ATTGGGTGCTATGAAGACTTTTGGTGACCTAGATATTGAGTCCTTTGGAGTTAGCCATGATGCTGCATGTCCGCAATTTT
ACCGTTTTATGAAGGATGACAAATCCTTTGTTATGTTGACGGATACAGGCTATGTCAGTGACCGCATGGTTGGAATTGTA
GAAAATGCCGATGCTTATTTGATTGAATCGAACCATGATATTGAAATTTTGCGCTCAGGTTCTTATTCATGGAATTTGAA
GCAACGGATTCTATCCGATAAGGGACATCTTTGTAACGAAGATGGAGCTGATGCCATGATTCGCTCGTTGGGAAATCGGA
CCAAAAAGATTTACCTAGGGCATTTGTCAAAGGAAAACAATATCAAGGAATTGGCTCACATGACCATGGTTAATCAATTG
GCTCAGGCTGATTTAGGAGTTGGAGTGGATTTCCAAGTCTATGACACATCGCCAGATACAGCGACTCCCTTGACCAAGAT
TTGA

Domains

Predicted by InterproScan.

Metallo-beta-lactamase superfamily (Lactamase_B)

(15-160)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A123TMP5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vicX Streptococcus mutans UA159

76.779

100

0.768