Detailed information    

insolico Bioinformatically predicted

Overview

Name   vicX   Type   Regulator
Locus tag   RMP64_RS06940 Genome accession   NZ_CP135093
Coordinates   1396664..1397467 (-) Length   267 a.a.
NCBI ID   WP_002935843.1    Uniprot ID   -
Organism   Streptococcus suis strain 1652329     
Function   require for competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 1391664..1402467
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RMP64_RS06920 (RMP64_06920) - 1391731..1392777 (-) 1047 WP_024394416.1 D-alanine--D-alanine ligase -
  RMP64_RS06925 (RMP64_06925) recR 1392882..1393478 (-) 597 WP_002935848.1 recombination mediator RecR -
  RMP64_RS06930 (RMP64_06930) pbp2b 1393487..1395562 (-) 2076 WP_024394417.1 penicillin-binding protein PBP2B -
  RMP64_RS06935 (RMP64_06935) - 1395654..1396103 (-) 450 WP_043032937.1 ATP-binding cassette domain-containing protein -
  RMP64_RS06940 (RMP64_06940) vicX 1396664..1397467 (-) 804 WP_002935843.1 MBL fold metallo-hydrolase Regulator
  RMP64_RS06945 (RMP64_06945) micB 1397474..1398823 (-) 1350 WP_002935841.1 cell wall metabolism sensor histidine kinase VicK Regulator
  RMP64_RS06950 (RMP64_06950) micA 1398816..1399520 (-) 705 WP_002935840.1 response regulator YycF Regulator
  RMP64_RS06955 (RMP64_06955) - 1399714..1400475 (+) 762 WP_002935839.1 amino acid ABC transporter ATP-binding protein -
  RMP64_RS06960 (RMP64_06960) - 1400486..1401325 (+) 840 WP_002935837.1 transporter substrate-binding domain-containing protein -
  RMP64_RS06965 (RMP64_06965) - 1401340..1402038 (+) 699 WP_002935835.1 amino acid ABC transporter permease -

Sequence

Protein


Download         Length: 267 a.a.        Molecular weight: 29659.75 Da        Isoelectric Point: 5.7755

>NTDB_id=885042 RMP64_RS06940 WP_002935843.1 1396664..1397467(-) (vicX) [Streptococcus suis strain 1652329]
MIGKGFNYSILASGSSGNCFYLETDKKKILVDAGLSGKKITSLLAEIDRKPEDIDAILVTHEHSDHIHGIGVLARKYGMD
IYANELTWQAMESKLGKIDVAQKHIFELGAMKTFGDLDIESFGVSHDAACPQFYRFMKDDKSFVMLTDTGYVSDRMVGIV
ENADAYLIESNHDIEILRSGSYSWNLKQRILSDKGHLCNEDGADAMIRSLGNRTKKIYLGHLSKENNIKELAHMTMVNQL
AQADLGVGVDFQVYDTSPDTATPLTKI

Nucleotide


Download         Length: 804 bp        

>NTDB_id=885042 RMP64_RS06940 WP_002935843.1 1396664..1397467(-) (vicX) [Streptococcus suis strain 1652329]
ATGATCGGAAAAGGTTTTAATTATAGTATTTTAGCTTCGGGGTCCAGCGGGAATTGTTTTTACCTAGAAACAGATAAAAA
GAAAATCTTAGTGGATGCTGGCTTATCAGGGAAAAAGATTACCAGTCTTTTGGCGGAAATTGATCGAAAGCCTGAGGATA
TTGATGCTATCCTGGTAACGCATGAACATAGCGATCACATCCATGGTATCGGTGTTTTAGCACGTAAGTATGGGATGGAC
ATTTATGCCAATGAATTGACCTGGCAGGCTATGGAGAGCAAATTGGGCAAGATTGATGTGGCTCAAAAACATATCTTTGA
ATTGGGTGCTATGAAGACTTTTGGCGACCTAGATATTGAGTCCTTTGGAGTTAGCCATGATGCTGCATGTCCGCAATTTT
ACCGTTTTATGAAGGATGACAAATCCTTTGTTATGTTGACGGATACAGGCTATGTCAGTGACCGCATGGTTGGAATTGTA
GAAAATGCCGATGCTTATTTGATTGAATCCAACCATGATATTGAAATTTTGCGCTCGGGTTCTTACTCTTGGAACCTCAA
ACAACGGATTTTGTCAGATAAGGGTCATCTTTGTAATGAAGATGGAGCTGATGCCATGATTCGCTCGTTGGGAAATCGGA
CCAAAAAGATTTACCTAGGGCATTTGTCAAAGGAAAACAATATCAAGGAATTGGCTCACATGACCATGGTTAATCAGTTG
GCGCAGGCTGATTTAGGAGTTGGAGTGGATTTCCAAGTCTATGACACATCGCCAGATACAGCGACTCCCTTGACCAAGAT
TTGA

Domains

Predicted by InterproScan.

Metallo-beta-lactamase superfamily (Lactamase_B)

(15-160)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vicX Streptococcus mutans UA159

77.154

100

0.772