Detailed information    

insolico Bioinformatically predicted

Overview

Name   pepF   Type   Regulator
Locus tag   RMP64_RS06425 Genome accession   NZ_CP135093
Coordinates   1282099..1283901 (-) Length   600 a.a.
NCBI ID   WP_087013688.1    Uniprot ID   -
Organism   Streptococcus suis strain 1652329     
Function   degradation of XIP; competence shut-off (predicted from homology)   
Competence regulation

Genomic Context

Location: 1277099..1288901
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RMP64_RS06400 (RMP64_06400) - 1278487..1278972 (-) 486 WP_002938099.1 LURP-one-related/scramblase family protein -
  RMP64_RS06405 (RMP64_06405) prsA 1279237..1280238 (-) 1002 WP_002938100.1 peptidylprolyl isomerase PrsA -
  RMP64_RS06410 (RMP64_06410) - 1280299..1281018 (-) 720 WP_009910106.1 O-methyltransferase -
  RMP64_RS06415 (RMP64_06415) - 1281093..1281641 (-) 549 WP_002938103.1 DUF6630 family protein -
  RMP64_RS06420 (RMP64_06420) - 1281657..1282097 (-) 441 WP_002938105.1 hypothetical protein -
  RMP64_RS06425 (RMP64_06425) pepF 1282099..1283901 (-) 1803 WP_087013688.1 oligoendopeptidase F Regulator
  RMP64_RS06430 (RMP64_06430) coiA 1284131..1285072 (-) 942 WP_024394671.1 competence protein CoiA Machinery gene
  RMP64_RS06435 (RMP64_06435) metG 1285133..1287136 (-) 2004 WP_024394672.1 methionine--tRNA ligase -
  RMP64_RS06440 (RMP64_06440) - 1287293..1287886 (+) 594 WP_024394673.1 DUF1361 domain-containing protein -

Sequence

Protein


Download         Length: 600 a.a.        Molecular weight: 69086.36 Da        Isoelectric Point: 4.6194

>NTDB_id=885039 RMP64_RS06425 WP_087013688.1 1282099..1283901(-) (pepF) [Streptococcus suis strain 1652329]
MSKQRYEIEEKYQWDLTTIFPTDEAWEAELADLQAETEKTKEFAGHLLDSAKSLLTISETQLGLMRRIEKLYVYASMKND
QDTREGKYQEFQAKAMGLYAAFSQAFAFYEPEFMAITEEKLEAFKVEEPALVQYSHQFEKLLAAKDHVLSQEVEEVLAAT
SEIFESPAETFSVLDNASLRFPEIADEDGHLVPLSHGNYIHFMESKNRDVRQEAYEAMYGTYEQFQHTYAKTLQSNVKVN
NLKARLRKYDSARHASLAANFIPESVYDTLVAAVNKHLPLLHRYINLRKKLLGIDDLKMYDMYTPLSDFSTKISYEDALK
KCQETLEIFGEDYSAIVKEAFENRWIDVHVNEGKRSGAYSGGAYDTNAFMLLNWQDNLDNMYTLIHETGHSLHSMLTRKT
QPYVYGHYSLFLAEIASTTNENLLTEKLLAEVEDDKERFAILNHYLDGFRGTVFRQTQFAEFEQAIYKADQEGQVLTADF
LNELYGQTNEKYYGLSAEENPEIQFEWARIPHFYYNFYVYQYATGFAAASALANKIVNGSPEDKENYLNYLKAGSSDYSL
NVIAKAGVDMTKEDYLNDAFKVFAARLEELEALVEKGVHL

Nucleotide


Download         Length: 1803 bp        

>NTDB_id=885039 RMP64_RS06425 WP_087013688.1 1282099..1283901(-) (pepF) [Streptococcus suis strain 1652329]
ATGTCTAAACAACGTTACGAAATTGAAGAAAAATACCAGTGGGATTTGACCACTATTTTCCCAACGGATGAAGCTTGGGA
AGCAGAACTTGCAGATTTACAAGCTGAAACTGAAAAAACAAAAGAATTTGCAGGTCACTTGCTCGACTCAGCGAAGAGCC
TTTTGACAATCAGTGAAACGCAACTTGGTCTTATGCGTCGCATTGAAAAACTCTATGTCTATGCGTCTATGAAGAACGAC
CAAGATACTCGCGAAGGAAAATATCAGGAATTTCAAGCTAAGGCCATGGGCTTGTATGCTGCCTTTTCACAGGCTTTTGC
CTTCTATGAGCCTGAATTTATGGCTATTACTGAAGAGAAATTGGAAGCCTTTAAAGTAGAAGAACCGGCTCTTGTTCAGT
ACAGCCACCAATTTGAAAAACTTCTGGCAGCCAAGGACCATGTCCTGTCACAAGAGGTGGAAGAAGTCCTTGCGGCAACC
AGCGAGATTTTTGAATCACCTGCTGAAACCTTCTCAGTCTTGGACAATGCTAGCCTGCGTTTCCCAGAAATCGCAGATGA
AGACGGTCACTTGGTGCCACTTTCACACGGAAACTACATCCACTTTATGGAGTCTAAAAACCGTGATGTCCGCCAAGAAG
CATACGAAGCTATGTACGGTACCTACGAGCAGTTCCAGCATACATACGCTAAGACCCTTCAGTCTAATGTCAAAGTCAAT
AACCTGAAAGCTCGTTTACGGAAGTACGACTCAGCTCGCCACGCATCACTTGCAGCTAATTTCATTCCAGAATCTGTTTA
CGATACATTAGTGGCGGCAGTCAACAAGCACCTTCCGCTCTTGCATCGTTACATCAATTTGCGTAAGAAGCTCCTGGGGA
TTGATGACTTGAAGATGTACGATATGTACACACCATTGTCAGATTTCAGCACCAAGATTTCTTATGAAGATGCTCTTAAA
AAATGTCAAGAAACCTTGGAAATCTTCGGCGAGGATTATTCGGCTATTGTGAAGGAAGCCTTCGAAAACCGCTGGATTGA
TGTCCATGTTAATGAAGGAAAACGCTCAGGAGCATATTCAGGAGGTGCCTACGACACCAACGCCTTCATGCTTCTCAACT
GGCAGGATAATTTGGATAACATGTACACCCTTATCCATGAAACAGGGCATTCTCTTCATTCCATGTTGACTCGTAAGACT
CAACCCTATGTCTATGGTCATTATTCCCTCTTCTTGGCAGAAATTGCTTCAACAACCAATGAAAATCTCCTAACAGAAAA
ACTCTTGGCAGAAGTAGAAGATGACAAGGAACGCTTTGCTATTCTTAACCATTACCTAGATGGTTTCCGTGGCACAGTCT
TCCGCCAGACACAATTTGCCGAGTTTGAACAAGCTATCTACAAGGCAGACCAGGAAGGTCAAGTCTTGACGGCTGATTTC
CTCAACGAATTGTACGGTCAGACAAACGAGAAATACTACGGACTTTCTGCCGAAGAAAATCCAGAAATCCAGTTTGAGTG
GGCTCGTATTCCACACTTCTATTACAATTTCTATGTCTATCAATATGCGACAGGTTTTGCGGCTGCATCAGCTCTTGCAA
ACAAGATTGTCAACGGCAGTCCAGAAGACAAAGAAAACTATCTCAACTACTTGAAGGCTGGTAGCTCAGATTATTCCCTC
AATGTCATTGCTAAAGCAGGTGTAGACATGACCAAGGAAGATTACCTCAACGACGCCTTTAAGGTTTTTGCGGCTCGTTT
GGAAGAATTAGAAGCTCTCGTTGAGAAAGGTGTGCACCTCTAA

Domains

Predicted by InterproScan.

Oligopeptidase F (Peptidase_M3_N)

(112-181)

Peptidase family M3 (Peptidase_M3)

(202-581)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pepF Streptococcus salivarius strain HSISS4

69.667

100

0.697