Detailed information    

insolico Bioinformatically predicted

Overview

Name   pptA   Type   Regulator
Locus tag   RMP64_RS02255 Genome accession   NZ_CP135093
Coordinates   457631..458365 (+) Length   244 a.a.
NCBI ID   WP_313921547.1    Uniprot ID   -
Organism   Streptococcus suis strain 1652329     
Function   export ComS (predicted from homology)   
Competence regulation

Genomic Context

Location: 452631..463365
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RMP64_RS02225 (RMP64_02225) - 452827..454491 (+) 1665 WP_024394949.1 DAK2 domain-containing protein -
  RMP64_RS02230 (RMP64_02230) tsaE 454592..455032 (+) 441 WP_024376437.1 tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex ATPase subunit type 1 TsaE -
  RMP64_RS02235 (RMP64_02235) - 455025..455552 (+) 528 WP_002939196.1 GNAT family N-acetyltransferase -
  RMP64_RS02240 (RMP64_02240) - 455549..456742 (+) 1194 WP_002939198.1 LCP family protein -
  RMP64_RS02245 (RMP64_02245) - 456851..457153 (-) 303 WP_002939199.1 hypothetical protein -
  RMP64_RS02250 (RMP64_02250) - 457155..457568 (-) 414 WP_002939203.1 HIT family protein -
  RMP64_RS02255 (RMP64_02255) pptA 457631..458365 (+) 735 WP_313921547.1 ABC transporter ATP-binding protein Regulator
  RMP64_RS02260 (RMP64_02260) - 458362..459402 (+) 1041 WP_043032974.1 ABC transporter permease -
  RMP64_RS02265 (RMP64_02265) ccrZ 459452..460246 (+) 795 WP_013730554.1 cell cycle regulator CcrZ -
  RMP64_RS02270 (RMP64_02270) trmB 460243..460881 (+) 639 WP_002939002.1 tRNA (guanosine(46)-N7)-methyltransferase TrmB -
  RMP64_RS02275 (RMP64_02275) rimP 461139..461609 (+) 471 WP_002942369.1 ribosome maturation factor RimP -
  RMP64_RS02280 (RMP64_02280) nusA 461682..462824 (+) 1143 WP_004194726.1 transcription termination factor NusA -
  RMP64_RS02285 (RMP64_02285) rnpM 462841..463137 (+) 297 WP_002942375.1 RNase P modulator RnpM -

Sequence

Protein


Download         Length: 244 a.a.        Molecular weight: 26790.07 Da        Isoelectric Point: 4.3999

>NTDB_id=885028 RMP64_RS02255 WP_313921547.1 457631..458365(+) (pptA) [Streptococcus suis strain 1652329]
MLEVKNVTGGYVNIPVLKDVSFTVEDGQLVGLIGLNGAGKSTTIKEIIGLLTPYQGQIAIDGLTLLQGAENYRKKIGFIP
ETPSLYEELTLKEHLEVVAMAYDLSWEQTWGRVEHLLKLFRLDEKLDWFPVNFSKGMKQKVMIICAFMVEPSLLIVDEPF
LGLDPVAISDLIALLGEEKSKGTSILMSTHVLDSAEKMCDSFVILHQGQVRATGNLEELQSAFGMDGASLNEIYLALTQE
GVAG

Nucleotide


Download         Length: 735 bp        

>NTDB_id=885028 RMP64_RS02255 WP_313921547.1 457631..458365(+) (pptA) [Streptococcus suis strain 1652329]
ATGTTAGAAGTAAAAAATGTAACTGGAGGATATGTCAATATCCCAGTTTTGAAAGATGTATCTTTTACCGTTGAGGATGG
TCAATTAGTTGGTCTAATTGGTTTAAATGGTGCAGGGAAATCAACGACTATTAAGGAAATTATCGGTCTTTTGACCCCCT
ATCAAGGACAGATTGCAATTGACGGCCTAACTTTGCTACAAGGGGCTGAAAATTATCGGAAGAAGATTGGGTTTATCCCT
GAAACACCAAGTTTGTATGAAGAACTAACCCTCAAAGAGCACTTGGAAGTGGTAGCAATGGCCTATGATTTATCCTGGGA
GCAAACTTGGGGACGTGTTGAGCACTTGTTAAAACTGTTTCGCTTGGATGAGAAATTGGACTGGTTTCCTGTCAATTTTT
CAAAGGGAATGAAGCAGAAGGTCATGATTATTTGTGCTTTTATGGTGGAGCCGAGTCTATTGATTGTTGATGAGCCTTTT
CTGGGATTAGACCCTGTGGCTATCTCTGATTTAATCGCTCTTTTGGGGGAAGAAAAATCTAAGGGCACTTCAATCCTCAT
GTCCACTCACGTTCTTGACTCAGCTGAGAAAATGTGCGACTCTTTTGTGATTTTACATCAGGGACAGGTCCGTGCAACTG
GAAATTTGGAGGAGCTACAAAGCGCATTTGGTATGGATGGTGCAAGTCTGAATGAAATTTATCTGGCCTTGACGCAAGAA
GGAGTGGCTGGATGA

Domains

Predicted by InterproScan.

ABC transporter (ABC_tran)

(17-160)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pptA Streptococcus salivarius strain HSISS4

75.314

97.951

0.738
  pptA Streptococcus thermophilus LMD-9

73.64

97.951

0.721