Detailed information    

insolico Bioinformatically predicted

Overview

Name   spo0J   Type   Regulator
Locus tag   RMQ61_RS11705 Genome accession   NZ_CP135090
Coordinates   2386693..2387457 (+) Length   254 a.a.
NCBI ID   WP_313920868.1    Uniprot ID   -
Organism   Streptococcus suis strain ID48908     
Function   require for competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 2381693..2392457
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RMQ61_RS11690 (RMQ61_11700) - 2384075..2384758 (-) 684 WP_029173853.1 YoaK family protein -
  RMQ61_RS11695 (RMQ61_11705) rlmH 2384783..2385262 (-) 480 WP_002941741.1 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH -
  RMQ61_RS11700 (RMQ61_11710) htrA 2385436..2386632 (+) 1197 WP_009911075.1 S1C family serine protease Regulator
  RMQ61_RS11705 (RMQ61_11715) spo0J 2386693..2387457 (+) 765 WP_313920868.1 ParB/RepB/Spo0J family partition protein Regulator

Sequence

Protein


Download         Length: 254 a.a.        Molecular weight: 29025.41 Da        Isoelectric Point: 9.8173

>NTDB_id=885007 RMQ61_RS11705 WP_313920868.1 2386693..2387457(+) (spo0J) [Streptococcus suis strain ID48908]
MEELRTLNISKIHPNPYQPRIHFDEKELFELAQSIKENGLIQPIIVRKSSIIGYELLAGERRLRASQLAGLTTIPAVVKE
LTDDDLLYQAIIENLQRSNLNPIEEAASYQKLISRGLTHDEVAQIMGKSRPYISNLLRLLNLSSQTKQAVEEGKISQGHA
RQLVSFSEEKQAEWVQLILSKDLSVRTLEKLIAANKKKHTKLKQRDQFLKEQEDSLSKTLGTATKIIKKKNGSGEIRIIF
NDLDEFERIINNFK

Nucleotide


Download         Length: 765 bp        

>NTDB_id=885007 RMQ61_RS11705 WP_313920868.1 2386693..2387457(+) (spo0J) [Streptococcus suis strain ID48908]
ATGGAAGAATTACGTACACTAAATATTTCAAAAATCCATCCCAATCCCTATCAGCCAAGAATTCATTTTGATGAAAAGGA
GCTATTTGAGCTCGCTCAATCTATTAAGGAAAATGGCTTAATTCAACCGATTATTGTAAGAAAATCTTCTATTATCGGAT
ACGAATTATTAGCTGGAGAAAGAAGGTTGCGAGCCAGTCAATTAGCTGGACTGACTACAATACCAGCAGTGGTAAAGGAA
CTAACTGATGATGATTTACTCTATCAGGCTATCATAGAGAATCTGCAGCGTTCTAACTTAAATCCGATAGAAGAAGCAGC
CTCTTATCAAAAATTGATTAGTAGAGGGTTAACACATGATGAAGTTGCTCAAATCATGGGAAAATCAAGACCATATATCA
GTAATTTATTGCGCCTACTAAATCTATCATCTCAGACTAAACAAGCTGTAGAAGAAGGAAAAATTTCACAAGGGCACGCG
CGACAATTGGTGTCATTTTCAGAAGAAAAGCAAGCCGAATGGGTTCAACTCATTTTATCAAAGGATTTAAGTGTGCGTAC
GCTTGAAAAATTAATAGCTGCAAATAAGAAAAAACACACTAAGCTTAAACAACGCGACCAATTTTTAAAAGAACAGGAAG
ATTCACTCAGTAAAACTCTTGGAACAGCTACAAAAATTATCAAGAAGAAAAACGGGAGCGGAGAAATTCGGATTATCTTT
AATGATCTCGATGAATTCGAAAGAATTATCAACAATTTTAAATAG

Domains

Predicted by InterproScan.

HTH domain found in ParB protein (HTH_ParB)

(146-193)

ParB/Sulfiredoxin domain (ParB_N)

(7-94)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  spo0J Streptococcus mutans UA159

54.762

99.213

0.543