Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   RMQ61_RS10855 Genome accession   NZ_CP135090
Coordinates   2218883..2220250 (-) Length   455 a.a.
NCBI ID   WP_024393368.1    Uniprot ID   A0A0Z8DEI8
Organism   Streptococcus suis strain ID48908     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2213883..2225250
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RMQ61_RS10830 (RMQ61_10835) - 2214639..2215919 (-) 1281 WP_313920806.1 MFS transporter -
  RMQ61_RS10835 (RMQ61_10840) - 2216011..2216670 (-) 660 WP_313920807.1 LiaF transmembrane domain-containing protein -
  RMQ61_RS10840 (RMQ61_10845) - 2216675..2217121 (-) 447 WP_012775372.1 LytTR family DNA-binding domain-containing protein -
  RMQ61_RS10845 (RMQ61_10850) - 2217299..2218057 (-) 759 WP_002939965.1 TIGR00266 family protein -
  RMQ61_RS10850 (RMQ61_10855) - 2218265..2218759 (-) 495 WP_105095020.1 carbonic anhydrase -
  RMQ61_RS10855 (RMQ61_10860) radA 2218883..2220250 (-) 1368 WP_024393368.1 DNA repair protein RadA Machinery gene
  RMQ61_RS10860 (RMQ61_10865) - 2220257..2220790 (-) 534 WP_024403072.1 histidine phosphatase family protein -
  RMQ61_RS10865 (RMQ61_10870) - 2220797..2221240 (-) 444 WP_002939955.1 dUTP diphosphatase -
  RMQ61_RS10870 (RMQ61_10875) - 2221471..2221830 (-) 360 WP_024397964.1 YbaN family protein -
  RMQ61_RS10875 (RMQ61_10880) - 2221957..2222559 (+) 603 WP_015647489.1 NADPH-dependent FMN reductase -
  RMQ61_RS10880 (RMQ61_10885) - 2222574..2223809 (+) 1236 WP_313920808.1 NAD(P)H-dependent oxidoreductase -
  RMQ61_RS10885 (RMQ61_10890) - 2223890..2224684 (+) 795 WP_024388513.1 formate/nitrite transporter family protein -

Sequence

Protein


Download         Length: 455 a.a.        Molecular weight: 49859.33 Da        Isoelectric Point: 6.1911

>NTDB_id=885004 RMQ61_RS10855 WP_024393368.1 2218883..2220250(-) (radA) [Streptococcus suis strain ID48908]
MTIAKKKTTFVCQSCEYHSPKYLGRCPNCGSWSSFVEEVEVAEVKNERVSLTGEKTRPMKLNEVSSIQVARTKTNMEEFN
RVLGGGVVPGSLVLIGGDPGIGKSTLLLQVSTQLSTIGTVLYVSGEESAQQIKLRAERLGDIDSEFYLYAETNMQSIRTE
IEKIKPDFLIIDSIQTIMSPDISSVQGSVSQVREVTNELMQIAKTNNIATFIVGHMTKEGTLAGPRTLEHMVDTVLYFEG
ERQHTFRILRAVKNRFGSTNEIGIFEMQSQGLVEVLNPSEVFLEERLDGATGSAIVVTMEGTRPILAEVQALVTPTMFGN
AKRTTTGLDFNRASLIMAVLEKRAGLLLQNQDAYLKSAGGVKLDEPAIDLAVAVALASSYKDKPTNPQECFIGEIGLTGE
IRRVNRIEQRINEAAKLGFTKVYAPKNSLTGIKVPKEITVIGVTTIGEVLQKVFN

Nucleotide


Download         Length: 1368 bp        

>NTDB_id=885004 RMQ61_RS10855 WP_024393368.1 2218883..2220250(-) (radA) [Streptococcus suis strain ID48908]
ATGACCATCGCTAAGAAAAAAACAACCTTTGTCTGTCAATCCTGCGAGTACCACTCGCCCAAGTATCTGGGTCGTTGCCC
CAACTGTGGCTCCTGGTCTAGCTTTGTCGAGGAAGTGGAAGTCGCTGAAGTCAAGAACGAGCGGGTCAGCCTGACAGGTG
AGAAGACCCGTCCCATGAAACTCAATGAAGTGTCATCCATTCAAGTGGCTCGCACTAAGACTAACATGGAGGAGTTCAAC
CGCGTCCTCGGTGGCGGTGTGGTACCGGGGAGTCTAGTTCTCATTGGCGGCGATCCAGGGATTGGCAAGTCCACCTTGCT
CCTGCAAGTATCCACTCAGCTGTCTACCATTGGCACCGTCCTCTATGTGTCGGGGGAAGAGTCTGCCCAGCAGATTAAGT
TGCGAGCGGAACGCTTGGGCGACATTGACAGCGAGTTCTATCTCTATGCAGAGACCAATATGCAGAGCATTCGGACCGAG
ATTGAGAAAATCAAGCCAGATTTCCTGATTATCGACTCTATCCAGACCATTATGAGTCCTGACATCTCCAGCGTGCAAGG
CTCTGTCAGTCAGGTACGTGAAGTGACCAATGAGCTCATGCAGATTGCCAAGACCAACAATATCGCAACCTTTATCGTCG
GCCACATGACCAAGGAAGGAACCTTGGCTGGACCGCGGACCTTGGAGCACATGGTAGACACCGTTCTCTATTTTGAAGGC
GAGCGGCAGCACACCTTCCGTATCTTGCGGGCGGTCAAAAATCGCTTCGGCTCCACTAATGAAATCGGCATTTTTGAAAT
GCAGTCGCAGGGCTTGGTCGAAGTCCTCAATCCAAGTGAGGTCTTTCTGGAAGAGCGTCTGGACGGAGCGACTGGCTCGG
CTATTGTCGTGACCATGGAGGGTACCCGCCCAATCCTTGCGGAAGTGCAGGCTCTGGTGACGCCGACTATGTTTGGCAAT
GCCAAGCGGACCACGACAGGACTGGATTTCAACCGTGCTAGCTTGATTATGGCGGTTTTGGAAAAACGGGCAGGCCTGCT
CCTCCAAAACCAAGATGCCTACCTTAAGTCAGCAGGCGGGGTCAAACTGGATGAACCAGCCATTGACCTAGCGGTCGCAG
TTGCCCTTGCCTCCAGTTACAAGGACAAGCCAACCAACCCACAAGAGTGCTTTATTGGCGAGATTGGCCTGACAGGGGAA
ATCCGCCGCGTCAATCGGATTGAACAACGGATTAACGAAGCCGCCAAATTGGGCTTTACAAAGGTCTATGCCCCCAAAAA
TTCCCTGACAGGTATCAAGGTGCCCAAGGAAATCACGGTTATCGGCGTGACCACCATTGGCGAAGTCTTACAGAAAGTAT
TCAACTGA

Domains

Predicted by InterproScan.

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(10-37)

AAA domain (AAA_25)

(64-220)

Subunit ChlI of Mg-chelatase (ChlI)

(363-427)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0Z8DEI8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Streptococcus mitis NCTC 12261

91.372

99.341

0.908
  radA Streptococcus pneumoniae Rx1

91.15

99.341

0.905
  radA Streptococcus pneumoniae D39

91.15

99.341

0.905
  radA Streptococcus pneumoniae R6

91.15

99.341

0.905
  radA Streptococcus pneumoniae TIGR4

91.15

99.341

0.905
  radA Streptococcus mitis SK321

90.929

99.341

0.903
  radA Bacillus subtilis subsp. subtilis str. 168

62.693

99.56

0.624