Detailed information    

insolico Bioinformatically predicted

Overview

Name   oppA   Type   Regulator
Locus tag   RMQ61_RS09665 Genome accession   NZ_CP135090
Coordinates   1980186..1981976 (-) Length   596 a.a.
NCBI ID   WP_313926303.1    Uniprot ID   -
Organism   Streptococcus suis strain ID48908     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 1975186..1986976
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RMQ61_RS09640 (RMQ61_09645) - 1975507..1975872 (-) 366 WP_002939192.1 Asp23/Gls24 family envelope stress response protein -
  RMQ61_RS09645 (RMQ61_09650) - 1975994..1976896 (-) 903 WP_002942329.1 ABC transporter permease -
  RMQ61_RS09650 (RMQ61_09655) opp4B 1976910..1977866 (-) 957 WP_024397663.1 oligopeptide ABC transporter permease -
  RMQ61_RS09655 (RMQ61_09660) - 1977868..1978809 (-) 942 WP_313926302.1 ATP-binding cassette domain-containing protein -
  RMQ61_RS09660 (RMQ61_09665) - 1978812..1979810 (-) 999 WP_002942324.1 ABC transporter ATP-binding protein -
  RMQ61_RS09665 (RMQ61_09670) oppA 1980186..1981976 (-) 1791 WP_313926303.1 oligopeptide ABC transporter substrate-binding protein Regulator
  RMQ61_RS09670 (RMQ61_09675) pbp3 1982189..1983430 (+) 1242 WP_313926304.1 D-alanyl-D-alanine carboxypeptidase PBP3 -
  RMQ61_RS09675 (RMQ61_09680) sufB 1983704..1985119 (-) 1416 WP_002938151.1 Fe-S cluster assembly protein SufB -
  RMQ61_RS09680 (RMQ61_09685) sufU 1985521..1985961 (-) 441 WP_313920633.1 Fe-S cluster assembly sulfur transfer protein SufU -

Sequence

Protein


Download         Length: 596 a.a.        Molecular weight: 65630.42 Da        Isoelectric Point: 4.4142

>NTDB_id=885000 RMQ61_RS09665 WP_313926303.1 1980186..1981976(-) (oppA) [Streptococcus suis strain ID48908]
MKKTTKLFALAGVTLLSASVLVACGSKQSGAAKQELSFPAEVKQDGTAVSDAQLKYAWVSPTTSSGLLIDELTENTTDST
FGGMVDISMFGYDGDRKLDDSGLAKAEFDVKGKKITVSLTGKDYKWSDGEPFTINDYIFTIKSMASKDYTGIRFDDKFLN
IEGMQEFVDGKASDISGIKKVDDYTVELTVKEMSPSMMYAGGDVPAYIQPEHIYKDIPVADWEKSEYSRTAKLVGMGPWK
IKEIVNGESITYVPNEYFFKGTTPKTSSLKIDIVSPDTIVSEMKAGNYDIADMPVDQLDSYKDASNLNIVGSLDSAYEYI
SFNLGKYDDAAGKSVMDENAKMNDVKLRQAIAYAIDTKTAGESLYNGLYHPASSLIISFFGDIHDSELEGYSYDPEKAKK
LLEEAGYKDVDGDGIREGKDGKEFKITFAARKRTEANEALVQQYIAWWKEVGLNVELYTGRTVEGNTFYEAVQANDPAID
MYAGGWSTGYDPNPTGLWGPIAAFNMSRFVSDENTKLLDAISSTESFDDKKNVENYKAWQKYAHEQAFAIPTFESESIVA
LNKRVKNYDTNYGSASGKGIALENIELTADKGVVAE

Nucleotide


Download         Length: 1791 bp        

>NTDB_id=885000 RMQ61_RS09665 WP_313926303.1 1980186..1981976(-) (oppA) [Streptococcus suis strain ID48908]
ATGAAAAAGACAACGAAACTTTTTGCACTTGCAGGTGTGACTCTCCTTTCAGCATCTGTTCTTGTAGCATGTGGTTCAAA
ACAATCAGGTGCAGCAAAACAGGAATTGTCATTCCCAGCTGAAGTAAAACAAGACGGAACAGCAGTGTCTGACGCTCAGT
TGAAATACGCATGGGTATCACCAACAACTTCATCAGGTCTCTTGATTGATGAGTTGACTGAAAATACGACTGATTCAACA
TTTGGTGGTATGGTTGACATTTCAATGTTCGGTTACGATGGAGATCGTAAGTTGGACGACTCAGGTCTTGCTAAGGCTGA
ATTTGATGTGAAAGGTAAGAAAATCACAGTCAGCTTGACTGGTAAGGATTACAAGTGGTCAGATGGTGAGCCATTCACAA
TCAACGACTACATCTTTACAATTAAGTCAATGGCAAGCAAAGACTATACAGGTATTCGTTTTGATGATAAATTCTTGAAC
ATTGAAGGTATGCAAGAATTTGTTGATGGAAAAGCATCAGACATCTCTGGTATTAAGAAAGTTGATGACTATACAGTAGA
ATTAACTGTAAAAGAAATGTCACCTTCAATGATGTATGCAGGTGGTGATGTCCCAGCCTATATCCAACCAGAACACATCT
ATAAAGACATCCCTGTTGCAGACTGGGAAAAGAGCGAGTACTCACGTACAGCTAAACTTGTTGGTATGGGACCTTGGAAA
ATCAAGGAAATCGTAAACGGTGAGTCTATCACTTACGTACCAAACGAATACTTCTTCAAAGGTACAACGCCAAAAACAAG
TTCATTGAAGATTGACATCGTATCACCAGATACAATCGTTTCTGAGATGAAAGCTGGTAACTATGACATCGCAGATATGC
CTGTTGACCAGTTGGATTCTTATAAAGATGCATCTAACTTGAATATCGTTGGTTCTTTGGATTCAGCTTATGAATATATC
TCATTCAACCTTGGTAAATATGACGATGCTGCTGGCAAGAGCGTTATGGATGAGAATGCTAAGATGAATGATGTGAAACT
TCGTCAAGCGATTGCCTATGCGATTGATACCAAGACAGCTGGTGAGTCATTGTACAATGGTCTTTACCACCCTGCAAGCT
CATTGATTATCTCATTCTTCGGCGATATTCATGATTCAGAGTTGGAAGGCTATTCATACGATCCTGAAAAAGCGAAAAAA
CTCTTGGAAGAAGCTGGCTACAAAGACGTAGATGGCGATGGTATCCGTGAAGGTAAAGACGGTAAGGAATTTAAGATTAC
CTTTGCTGCTCGTAAACGTACTGAAGCCAACGAAGCGCTTGTACAACAGTACATTGCTTGGTGGAAAGAAGTTGGCTTGA
ACGTTGAACTTTACACAGGCCGTACAGTTGAAGGCAATACATTCTACGAAGCTGTTCAAGCAAATGATCCTGCTATCGAT
ATGTACGCTGGTGGTTGGTCAACAGGTTATGATCCAAACCCAACTGGTCTTTGGGGTCCTATCGCTGCCTTCAACATGTC
ACGTTTCGTGTCTGATGAAAATACTAAATTGTTGGACGCAATTAGCTCAACAGAATCATTTGACGATAAGAAAAATGTTG
AGAACTATAAGGCTTGGCAAAAATATGCTCACGAGCAAGCATTTGCTATTCCTACATTTGAATCTGAGTCAATTGTAGCA
CTTAACAAACGTGTGAAAAACTATGACACTAACTATGGTTCAGCTTCAGGTAAAGGTATCGCTCTTGAAAATATCGAACT
TACAGCTGATAAAGGTGTAGTGGCAGAATAA

Domains

Predicted by InterproScan.

Bacterial extracellular solute-binding proteins, family 5 Middle (SBP_bac_5)

(103-499)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  oppA Streptococcus suis isolate S10

94.295

100

0.943