Detailed information    

insolico Bioinformatically predicted

Overview

Name   pptA   Type   Regulator
Locus tag   RMQ61_RS09600 Genome accession   NZ_CP135090
Coordinates   1969193..1969927 (-) Length   244 a.a.
NCBI ID   WP_313920617.1    Uniprot ID   -
Organism   Streptococcus suis strain ID48908     
Function   export ComS (predicted from homology)   
Competence regulation

Genomic Context

Location: 1964193..1974927
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RMQ61_RS09580 (RMQ61_09585) - 1965382..1966503 (-) 1122 WP_125069841.1 IS110 family transposase -
  RMQ61_RS09585 (RMQ61_09590) trmB 1966677..1967315 (-) 639 WP_002939002.1 tRNA (guanosine(46)-N7)-methyltransferase TrmB -
  RMQ61_RS09590 (RMQ61_09595) ccrZ 1967312..1968106 (-) 795 WP_002942360.1 cell cycle regulator CcrZ -
  RMQ61_RS09595 (RMQ61_09600) - 1968156..1969196 (-) 1041 WP_313920615.1 ABC transporter permease -
  RMQ61_RS09600 (RMQ61_09605) pptA 1969193..1969927 (-) 735 WP_313920617.1 ABC transporter ATP-binding protein Regulator
  RMQ61_RS09605 (RMQ61_09610) - 1969990..1970403 (+) 414 WP_313926300.1 HIT family protein -
  RMQ61_RS09610 (RMQ61_09615) - 1970405..1970707 (+) 303 WP_024395377.1 hypothetical protein -
  RMQ61_RS09615 (RMQ61_09620) tnpA 1970865..1971346 (-) 482 Protein_1863 IS200/IS605 family transposase -
  RMQ61_RS09620 (RMQ61_09625) - 1971589..1972782 (-) 1194 WP_313926301.1 LCP family protein -
  RMQ61_RS09625 (RMQ61_09630) - 1972779..1973306 (-) 528 WP_012775687.1 GNAT family N-acetyltransferase -
  RMQ61_RS09630 (RMQ61_09635) tsaE 1973299..1973739 (-) 441 WP_024383566.1 tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex ATPase subunit type 1 TsaE -

Sequence

Protein


Download         Length: 244 a.a.        Molecular weight: 26774.07 Da        Isoelectric Point: 4.3999

>NTDB_id=884999 RMQ61_RS09600 WP_313920617.1 1969193..1969927(-) (pptA) [Streptococcus suis strain ID48908]
MLEVKNVTGGYVNIPVLKDVSFTVEDGQLVGLIGLNGAGKSTTIKEIIGLLTPYQGQIAIDGLTLLQGAENYRKKIGFIP
ETPSLYEELTLKEHLEVVAMAYDLSWEQAWGRVEHLLKLFRLDEKLDWFPVNFSKGMKQKVMIICAFMVEPSLLIVDEPF
LGLDPVAISDLIALLAEEKSKGTSILMSTHVLDSAEKMCDSFVILHQGQVRATGNLEELQSAFGMDGASLNEIYLALTQE
GVAG

Nucleotide


Download         Length: 735 bp        

>NTDB_id=884999 RMQ61_RS09600 WP_313920617.1 1969193..1969927(-) (pptA) [Streptococcus suis strain ID48908]
ATGTTAGAAGTAAAAAATGTAACTGGAGGATATGTCAATATCCCAGTTTTGAAAGATGTATCTTTTACTGTTGAGGATGG
TCAATTAGTTGGTCTAATTGGTTTAAATGGTGCAGGGAAATCAACGACTATTAAGGAAATTATCGGTCTTTTGACCCCCT
ATCAAGGACAGATTGCAATTGACGGCCTAACTTTGCTACAAGGGGCTGAAAATTATCGGAAGAAGATTGGGTTTATCCCT
GAAACACCAAGTTTGTATGAAGAACTAACCCTCAAAGAGCACTTGGAAGTGGTAGCAATGGCCTATGATTTATCCTGGGA
GCAAGCTTGGGGACGTGTTGAGCACTTGTTAAAACTGTTTCGCTTGGATGAGAAATTGGACTGGTTTCCTGTCAATTTTT
CAAAGGGAATGAAGCAGAAGGTCATGATTATTTGTGCTTTTATGGTGGAGCCGAGTCTATTGATTGTTGATGAGCCTTTT
CTGGGATTAGACCCTGTGGCTATCTCTGACTTGATCGCTCTTTTGGCGGAAGAAAAATCTAAGGGCACTTCAATCCTCAT
GTCCACTCACGTTCTTGACTCAGCTGAGAAAATGTGCGACTCTTTTGTGATTTTACATCAGGGACAGGTTCGTGCAACTG
GAAATTTGGAGGAGCTACAAAGCGCATTTGGTATGGATGGTGCAAGTCTGAATGAAATTTATCTGGCCTTGACGCAAGAA
GGAGTGGCTGGATGA

Domains

Predicted by InterproScan.

ABC transporter (ABC_tran)

(17-160)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pptA Streptococcus salivarius strain HSISS4

75.732

97.951

0.742
  pptA Streptococcus thermophilus LMD-9

74.059

97.951

0.725