Detailed information    

insolico Bioinformatically predicted

Overview

Name   pepF   Type   Regulator
Locus tag   RMQ61_RS07650 Genome accession   NZ_CP135090
Coordinates   1556138..1557940 (-) Length   600 a.a.
NCBI ID   WP_313919381.1    Uniprot ID   -
Organism   Streptococcus suis strain ID48908     
Function   degradation of XIP; competence shut-off (predicted from homology)   
Competence regulation

Genomic Context

Location: 1551138..1562940
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RMQ61_RS07625 (RMQ61_07630) - 1552523..1553008 (-) 486 WP_313919373.1 LURP-one-related family protein -
  RMQ61_RS07630 (RMQ61_07635) prsA 1553276..1554277 (-) 1002 WP_014735705.1 peptidylprolyl isomerase PrsA -
  RMQ61_RS07635 (RMQ61_07640) - 1554338..1555057 (-) 720 WP_050571607.1 O-methyltransferase -
  RMQ61_RS07640 (RMQ61_07645) - 1555132..1555680 (-) 549 WP_313919378.1 DUF6630 family protein -
  RMQ61_RS07645 (RMQ61_07650) - 1555696..1556136 (-) 441 WP_313919380.1 hypothetical protein -
  RMQ61_RS07650 (RMQ61_07655) pepF 1556138..1557940 (-) 1803 WP_313919381.1 oligoendopeptidase F Regulator
  RMQ61_RS07655 (RMQ61_07660) coiA 1558171..1559112 (-) 942 WP_313919384.1 competence protein CoiA family protein Machinery gene
  RMQ61_RS07660 (RMQ61_07665) metG 1559173..1561176 (-) 2004 WP_313919386.1 methionine--tRNA ligase -
  RMQ61_RS07665 (RMQ61_07670) - 1561385..1562134 (-) 750 WP_313919388.1 hypothetical protein -
  RMQ61_RS07670 (RMQ61_07675) - 1562216..1562827 (-) 612 WP_313919390.1 DUF3885 domain-containing protein -

Sequence

Protein


Download         Length: 600 a.a.        Molecular weight: 69185.32 Da        Isoelectric Point: 4.5550

>NTDB_id=884986 RMQ61_RS07650 WP_313919381.1 1556138..1557940(-) (pepF) [Streptococcus suis strain ID48908]
MSKQRYEIEEKYQWDLTTIFPTDEAWEAELADLQAETEKTKEFAGHLLDSAKSLLEISETQLSLMRRIEKLYVYASMKND
QDTREGKYQEFQAKAMGLYAAFSQAFAFYEPEFMAITEEQLEAFKAEEPTLVQYSHQFEKLLAAKDHVLSQEVEEVLAAT
SEIFESPAETFSVLDNASLRFPEIADEDGHLVPLSHGNYIHFMESKNRDVRQEAYEAMYGTYEQFQHTYAKTLQSNVKVN
NLKAHLRKYDSARHASLAANFIPESVYDTLVAAVNKHLPLLHRYINLRKKLLGIDDLKMYDMYTPLSDFSTKISYEDALK
KCQETLEIFGEDYSAIVKEAFENRWIDVHVNEGKRSGAYSGGAYDTNAFMLLNWQDNLDNMYTLIHETGHSLHSMLTRKT
QPYVYGHYSLFLAEIASTTNENLLTEKLLAEVEDDKERFAILNHYLDGFRGTVFRQTQFAEFEQAIYKADQEGQVLTADF
LNELYGQTNEKYYGLSAEENPEIQFEWARIPHFYYNFYVYQYATGFAAASALANKIVNGSPEDKENYLNYLKAGSSDYSL
NVIAKAGVDMTKEDYLNDAFKVFEARLEELEALVEKGVHL

Nucleotide


Download         Length: 1803 bp        

>NTDB_id=884986 RMQ61_RS07650 WP_313919381.1 1556138..1557940(-) (pepF) [Streptococcus suis strain ID48908]
ATGTCTAAACAACGTTACGAAATTGAAGAAAAATACCAGTGGGATTTAACCACTATTTTCCCAACGGATGAAGCTTGGGA
AGCAGAACTTGCGGATTTACAAGCTGAAACTGAAAAAACAAAAGAATTTGCAGGTCATTTACTGGACTCAGCTAAAAGTC
TCTTAGAAATTAGCGAAACGCAACTTAGTCTTATGCGTCGCATTGAAAAACTCTATGTCTATGCGTCTATGAAGAACGAC
CAAGATACTCGCGAAGGAAAATATCAGGAATTTCAAGCTAAGGCCATGGGCTTGTATGCTGCCTTTTCACAGGCTTTTGC
CTTCTATGAGCCTGAATTTATGGCCATTACTGAAGAGCAGCTGGAGGCCTTTAAGGCAGAAGAGCCTACTCTTGTTCAGT
ACAGCCACCAATTTGAAAAACTTCTGGCAGCCAAGGACCATGTCCTGTCACAAGAGGTGGAAGAAGTCCTTGCGGCAACC
AGCGAGATTTTTGAATCACCTGCTGAAACCTTCTCAGTCTTGGACAATGCTAGCCTGCGTTTCCCAGAAATCGCAGATGA
AGACGGTCACTTGGTGCCACTTTCACACGGAAACTACATCCACTTTATGGAGTCTAAAAACCGTGATGTCCGCCAAGAAG
CATACGAAGCTATGTACGGTACCTACGAGCAGTTCCAGCATACATACGCTAAGACCCTTCAGTCTAATGTCAAAGTCAAT
AACCTGAAAGCTCATTTACGGAAGTACGACTCAGCTCGCCACGCATCACTTGCAGCTAATTTCATTCCAGAATCTGTTTA
CGATACATTAGTGGCGGCAGTCAACAAGCACCTTCCGCTCTTGCACCGTTATATCAATTTGCGTAAGAAACTCCTAGGTA
TTGATGACTTGAAGATGTACGATATGTACACACCATTGTCAGATTTTAGTACTAAGATTTCTTACGAAGATGCTCTTAAA
AAATGTCAAGAAACCTTGGAAATCTTCGGCGAGGATTATTCGGCTATTGTGAAGGAAGCCTTCGAAAACCGCTGGATTGA
TGTCCATGTTAATGAAGGAAAACGCTCAGGAGCATACTCAGGAGGTGCCTACGACACCAACGCCTTCATGCTTCTCAACT
GGCAGGATAACTTGGATAACATGTACACCCTTATCCATGAAACAGGACATTCTCTTCATTCCATGTTGACTCGTAAGACT
CAACCCTATGTCTATGGCCATTATTCACTTTTCTTGGCTGAAATTGCTTCAACTACCAACGAAAACCTTCTGACTGAAAA
ACTCTTGGCAGAAGTAGAAGATGATAAGGAACGCTTTGCGATTCTTAACCATTACCTAGATGGTTTCCGCGGCACAGTCT
TCCGCCAGACCCAATTTGCCGAGTTTGAGCAAGCTATCTATAAGGCAGACCAGGAAGGTCAGGTCTTGACGGCTGATTTC
CTCAATGAATTGTACGGTCAGACAAACGAGAAATATTACGGACTTTCTGCCGAAGAAAATCCAGAAATCCAGTTTGAGTG
GGCTCGTATTCCACACTTCTATTACAATTTCTATGTCTATCAGTATGCGACAGGTTTTGCAGCAGCATCAGCTCTAGCAA
ATAAGATTGTCAATGGTAGCCCAGAAGACAAAGAAAACTATCTCAACTACTTGAAGGCTGGTAGCTCAGATTATTCCCTC
AACGTCATTGCAAAAGCTGGTGTAGACATGACCAAGGAAGATTACCTCAATGATGCCTTCAAGGTTTTTGAGGCTCGTTT
GGAAGAATTAGAAGCTCTCGTTGAGAAAGGTGTGCACCTCTAA

Domains

Predicted by InterproScan.

Peptidase family M3 (Peptidase_M3)

(202-581)

Oligopeptidase F (Peptidase_M3_N)

(112-181)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pepF Streptococcus salivarius strain HSISS4

69.833

100

0.698