Detailed information    

insolico Bioinformatically predicted

Overview

Name   clpE   Type   Regulator
Locus tag   RMQ61_RS02800 Genome accession   NZ_CP135090
Coordinates   545548..547776 (-) Length   742 a.a.
NCBI ID   WP_313926487.1    Uniprot ID   -
Organism   Streptococcus suis strain ID48908     
Function   degradation of ComX (predicted from homology)   
Competence regulation

Genomic Context

Location: 540548..552776
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RMQ61_RS02780 (RMQ61_02780) - 540912..541355 (+) 444 WP_015646543.1 GNAT family N-acetyltransferase -
  RMQ61_RS02785 (RMQ61_02785) ileS 541366..544155 (+) 2790 WP_313921106.1 isoleucine--tRNA ligase -
  RMQ61_RS02790 (RMQ61_02790) - 544538..544846 (-) 309 WP_002938710.1 DUF1827 family protein -
  RMQ61_RS02795 (RMQ61_02795) - 544901..545362 (-) 462 WP_002938708.1 NUDIX hydrolase -
  RMQ61_RS02800 (RMQ61_02800) clpE 545548..547776 (-) 2229 WP_313926487.1 ATP-dependent Clp protease ATP-binding subunit Regulator
  RMQ61_RS02805 (RMQ61_02805) - 548000..548230 (+) 231 WP_002938704.1 DUF1797 family protein -
  RMQ61_RS02810 (RMQ61_02810) - 548356..549045 (+) 690 WP_002938702.1 amino acid ABC transporter permease -
  RMQ61_RS02815 (RMQ61_02815) - 549038..549772 (+) 735 WP_002943067.1 amino acid ABC transporter ATP-binding protein -
  RMQ61_RS02820 (RMQ61_02820) - 549902..550750 (+) 849 WP_313926488.1 bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase -
  RMQ61_RS02825 (RMQ61_02825) - 550993..551442 (+) 450 WP_313926489.1 YSIRK-type signal peptide-containing protein -
  RMQ61_RS02830 (RMQ61_02830) - 551462..551755 (+) 294 WP_313926490.1 hypothetical protein -
  RMQ61_RS02835 (RMQ61_02835) - 551763..552254 (+) 492 WP_313926491.1 hypothetical protein -

Sequence

Protein


Download         Length: 742 a.a.        Molecular weight: 82666.06 Da        Isoelectric Point: 5.3518

>NTDB_id=884977 RMQ61_RS02800 WP_313926487.1 545548..547776(-) (clpE) [Streptococcus suis strain ID48908]
MLCKNCNINDATIHLYTNLNGKQQQVDLCHNCYQIMKTDPNNAILRGLGDLTNPNNMDPFSEFFNHLGGYPGNTPAGKNR
EQTPPTQAGGHNGRGGQTPPPQQPQQPNGLLEEFGINVTEIARRGDIDPVIGRDQEITRVIEILNRRTKNNPVLIGEPGV
GKTAVVEGLAQKIVDGDVPQKLRDKEVIRLDVVSLVQGTGIRGQFEERMQKLMEEIRNRREIILFIDEIHEIVGAGSAGD
GNMDAGNILKPALARGEMQLVGATTLNEYRIIEKDAALERRMQPVKVEEPSVEETITILKGIQNKYQDYHHVKYSDAAIE
AAAVLSNRYIQDRFLPDKAIDLLDEAGSKMNLTLNFIDPKEIDQRLIDAENRKAQATRDEDYEKAAYFRDQIAKYKEMQK
ATISEEDIPLITEKEIEAIVEQKTNIPVGDLKEKEQSQLVNLASDLKAHVIGQDEAVDKIAKAIRRNRVGLGAPNRPIGS
FLFVGPTGVGKTELSKQLAIELFGSADSMIRFDMSEYMEKHAVAKLVGAPPGYVGYEEAGQLTEKVRRNPYSLILLDEVE
KAHPDVMHMFLQVLDDGRLTDGQGRTVSFKDTIIIMTSNAGTGKVEASVGFGAAMEGRTQSVLGQLSNFFTPEFMNRFDG
IIEFQPLRKENLLEIVSLMLDDVNKRLSHNGISLHVTDKVKEKLVDLGYDPKMGARPLRRTIQDQIEDAITDFYLEHPAE
KDLRAVMSSKGTIQIKAQTKTK

Nucleotide


Download         Length: 2229 bp        

>NTDB_id=884977 RMQ61_RS02800 WP_313926487.1 545548..547776(-) (clpE) [Streptococcus suis strain ID48908]
ATGCTCTGCAAAAATTGTAATATCAACGACGCAACGATCCATCTCTACACCAACTTAAACGGTAAACAGCAGCAGGTAGA
CCTCTGTCACAACTGCTACCAAATCATGAAAACAGACCCTAATAATGCCATCCTACGTGGGTTGGGAGATTTAACAAATC
CTAACAATATGGATCCCTTTAGTGAGTTCTTCAATCACCTAGGTGGCTATCCTGGCAATACCCCTGCTGGAAAAAATCGC
GAACAGACTCCTCCCACTCAAGCCGGTGGGCATAATGGACGTGGTGGACAGACCCCTCCTCCGCAACAACCCCAACAACC
AAATGGGCTCCTTGAAGAATTTGGTATCAACGTTACCGAAATTGCCCGTCGTGGGGATATTGATCCAGTAATCGGTCGCG
ATCAAGAAATTACCCGTGTCATCGAAATTCTCAACCGTCGTACAAAAAACAACCCTGTTCTTATCGGTGAGCCTGGTGTA
GGTAAAACAGCGGTTGTTGAAGGCTTGGCTCAAAAAATTGTCGATGGCGATGTCCCACAGAAATTACGAGACAAGGAAGT
CATTCGTCTGGATGTTGTCAGCCTCGTACAAGGAACAGGTATCCGTGGACAATTTGAAGAACGCATGCAAAAACTCATGG
AAGAAATCCGTAATCGTCGCGAAATCATTCTTTTTATTGACGAGATTCACGAAATTGTCGGTGCTGGCTCTGCAGGCGAT
GGTAACATGGATGCAGGCAATATCCTCAAACCAGCCCTCGCACGTGGTGAAATGCAACTAGTCGGTGCAACAACGCTCAA
CGAGTACCGTATTATCGAAAAAGATGCCGCCCTAGAACGCCGTATGCAACCTGTAAAAGTTGAAGAACCAAGTGTCGAAG
AAACCATTACCATTCTCAAAGGTATCCAAAATAAATACCAGGATTACCATCATGTTAAATACTCCGATGCTGCTATCGAA
GCGGCCGCAGTACTGTCCAACCGCTACATTCAAGACCGTTTCCTACCAGACAAGGCTATTGACCTTCTGGATGAAGCTGG
TTCAAAAATGAATTTGACCCTCAACTTTATTGATCCAAAGGAAATTGACCAACGCCTGATTGATGCCGAAAATCGTAAAG
CACAAGCTACACGGGATGAGGACTATGAAAAAGCGGCCTATTTCCGTGACCAAATTGCTAAGTACAAGGAGATGCAAAAG
GCAACTATCAGCGAGGAAGATATTCCACTCATTACTGAAAAAGAAATTGAGGCCATCGTTGAGCAAAAAACAAATATCCC
AGTTGGTGATTTAAAAGAAAAGGAACAGTCCCAGCTTGTGAACCTCGCTAGTGACTTAAAAGCCCATGTTATCGGACAAG
ATGAAGCAGTTGACAAGATAGCTAAAGCCATCCGCCGTAATCGTGTCGGTCTCGGTGCTCCAAATCGTCCCATTGGATCC
TTCCTCTTTGTCGGACCAACAGGTGTCGGTAAAACCGAATTGTCTAAGCAATTAGCTATCGAACTCTTCGGTTCGGCTGA
CAGCATGATCCGCTTCGACATGTCCGAATACATGGAAAAACACGCTGTCGCTAAACTCGTCGGAGCTCCTCCAGGCTATG
TAGGCTATGAGGAGGCTGGACAATTGACTGAAAAAGTCCGTCGTAATCCTTATTCACTCATCCTCCTTGACGAAGTTGAA
AAAGCCCACCCAGATGTTATGCACATGTTCCTTCAGGTCTTAGACGATGGTCGTCTAACAGATGGACAAGGTCGGACAGT
CAGCTTCAAAGATACCATCATCATCATGACATCAAATGCTGGTACTGGAAAAGTTGAAGCAAGTGTCGGTTTTGGTGCAG
CTATGGAAGGGCGGACTCAATCAGTCCTTGGCCAACTTAGCAATTTCTTCACACCTGAATTTATGAACCGATTTGACGGT
ATTATTGAGTTCCAACCACTGAGGAAGGAAAACCTACTTGAAATCGTCAGCCTCATGCTAGACGATGTAAACAAACGCCT
TTCTCACAATGGCATCAGCCTCCATGTAACAGATAAAGTTAAGGAGAAATTAGTGGACCTTGGCTACGATCCAAAGATGG
GAGCTCGTCCACTACGCAGAACCATCCAAGATCAGATTGAAGATGCTATCACCGACTTCTACTTAGAACATCCAGCAGAA
AAAGACCTACGTGCTGTCATGTCAAGTAAAGGTACAATTCAAATCAAGGCACAAACAAAGACAAAATAA

Domains

Predicted by InterproScan.

ATPase family associated with various cellular activities (AAA) (AAA)

(153-272)

AAA domain (Cdc48 subfamily) (AAA_2)

(476-639)

AAA lid domain (AAA_lid_9)

(291-389)

C-terminal, D2-small domain, of ClpB protein (ClpB_D2-small)

(647-721)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  clpE Streptococcus pneumoniae Rx1

82.228

100

0.836
  clpE Streptococcus pneumoniae D39

82.228

100

0.836
  clpE Streptococcus pneumoniae R6

82.228

100

0.836
  clpE Streptococcus pneumoniae TIGR4

82.228

100

0.836
  clpE Streptococcus mutans UA159

82.243

100

0.83
  clpC Lactococcus lactis subsp. cremoris KW2

77.517

97.709

0.757
  clpC Bacillus subtilis subsp. subtilis str. 168

52.462

87.601

0.46
  clpC Streptococcus mutans UA159

48.558

84.097

0.408
  clpC Streptococcus thermophilus LMD-9

48.248

84.636

0.408
  clpC Streptococcus thermophilus LMG 18311

47.93

84.636

0.406
  clpC Streptococcus pneumoniae TIGR4

47.68

84.232

0.402
  clpC Streptococcus pneumoniae Rx1

47.68

84.232

0.402
  clpC Streptococcus pneumoniae D39

47.68

84.232

0.402
  clpC Lactococcus lactis subsp. lactis strain DGCC12653

46.815

84.636

0.396