Detailed information    

insolico Bioinformatically predicted

Overview

Name   treR   Type   Regulator
Locus tag   RMQ61_RS01230 Genome accession   NZ_CP135090
Coordinates   228934..229647 (+) Length   237 a.a.
NCBI ID   WP_313921434.1    Uniprot ID   -
Organism   Streptococcus suis strain ID48908     
Function   regulate expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 223934..234647
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RMQ61_RS01220 (RMQ61_01220) treC 224945..226570 (-) 1626 WP_313920945.1 alpha,alpha-phosphotrehalase -
  RMQ61_RS01225 (RMQ61_01225) treP 226731..228594 (-) 1864 Protein_208 PTS system trehalose-specific EIIBC component -
  RMQ61_RS01230 (RMQ61_01230) treR 228934..229647 (+) 714 WP_313921434.1 trehalose operon repressor Regulator
  RMQ61_RS01235 (RMQ61_01235) - 229705..230016 (+) 312 WP_002935948.1 hypothetical protein -
  RMQ61_RS01240 (RMQ61_01240) - 230013..230561 (+) 549 WP_002935945.1 CvpA family protein -
  RMQ61_RS01245 (RMQ61_01245) - 231055..233388 (+) 2334 WP_172047803.1 endonuclease MutS2 -
  RMQ61_RS01250 (RMQ61_01250) - 233412..234065 (+) 654 WP_024386974.1 GNAT family N-acetyltransferase -

Sequence

Protein


Download         Length: 237 a.a.        Molecular weight: 27335.27 Da        Isoelectric Point: 7.3098

>NTDB_id=884972 RMQ61_RS01230 WP_313921434.1 228934..229647(+) (treR) [Streptococcus suis strain ID48908]
MKKYQEIYNDLKEKIRTNIYPAERSLPTEQQLQEMYGVSRDTVRKSLAMLTEGGLIQKVQGRGSMVLKQEILNFPVSGLT
SYQELTNVLQLSTKTDVVSLDMITVNSSLSHLTGFEPYSKVWKVVRTRSIDGKVSVVDTDYLAVDVVPELTTAIAEKSIY
EYLENKLGLDIAYAQKEITVEPTNREERELMQSKDDYLVLIKSRVYLGDTQQFQYTESKHKIDKFRFVDFARRKHSL

Nucleotide


Download         Length: 714 bp        

>NTDB_id=884972 RMQ61_RS01230 WP_313921434.1 228934..229647(+) (treR) [Streptococcus suis strain ID48908]
ATGAAAAAATACCAAGAAATCTATAATGATTTGAAAGAGAAAATCCGTACAAATATTTATCCGGCAGAAAGGTCTTTGCC
TACAGAACAACAATTACAGGAAATGTATGGAGTTAGTCGGGATACTGTTCGCAAATCTTTAGCTATGCTGACAGAGGGCG
GTCTCATCCAGAAGGTTCAAGGTCGTGGTTCAATGGTCCTTAAGCAAGAAATTCTCAATTTCCCAGTTTCAGGTTTAACT
TCCTACCAGGAATTGACAAATGTTCTCCAGCTTTCTACCAAGACAGATGTTGTCAGCTTAGATATGATTACCGTTAATAG
TAGCCTTTCGCATTTGACAGGCTTTGAGCCGTATAGCAAGGTGTGGAAAGTTGTCCGTACACGTTCGATTGACGGTAAGG
TCTCTGTTGTGGATACAGATTATCTTGCTGTCGATGTCGTGCCAGAGTTGACAACTGCTATTGCTGAAAAATCCATATAC
GAATACCTAGAAAATAAGTTAGGCCTTGATATTGCTTATGCACAAAAAGAGATTACGGTAGAGCCGACCAATCGAGAAGA
GCGTGAGCTAATGCAATCGAAGGATGATTATTTGGTCTTGATTAAATCTCGTGTCTATCTCGGTGATACCCAGCAATTCC
AATATACAGAAAGCAAGCATAAAATTGATAAATTCCGCTTTGTAGATTTTGCTCGTAGAAAGCATTCTTTATAG

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, gntR family (GntR)

(3-66)

UTRA domain (UTRA)

(91-226)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  treR Streptococcus mutans UA159

51.709

98.734

0.511