Detailed information    

insolico Bioinformatically predicted

Overview

Name   oppA   Type   Regulator
Locus tag   RMP65_RS08560 Genome accession   NZ_CP135089
Coordinates   1746920..1748707 (-) Length   595 a.a.
NCBI ID   WP_313681179.1    Uniprot ID   -
Organism   Streptococcus suis strain ID34567     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 1741920..1753707
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RMP65_RS08535 (RMP65_08535) - 1742240..1742605 (-) 366 WP_002939192.1 Asp23/Gls24 family envelope stress response protein -
  RMP65_RS08540 (RMP65_08540) - 1742727..1743629 (-) 903 WP_313681178.1 ABC transporter permease -
  RMP65_RS08545 (RMP65_08545) opp4B 1743643..1744599 (-) 957 WP_074391669.1 oligopeptide ABC transporter permease -
  RMP65_RS08550 (RMP65_08550) - 1744601..1745542 (-) 942 WP_029694475.1 ATP-binding cassette domain-containing protein -
  RMP65_RS08555 (RMP65_08555) - 1745545..1746543 (-) 999 WP_002942324.1 ABC transporter ATP-binding protein -
  RMP65_RS08560 (RMP65_08560) oppA 1746920..1748707 (-) 1788 WP_313681179.1 oligopeptide ABC transporter substrate-binding protein Regulator
  RMP65_RS08565 (RMP65_08565) pbp3 1748920..1750161 (+) 1242 WP_313681180.1 D-alanyl-D-alanine carboxypeptidase PBP3 -
  RMP65_RS08570 (RMP65_08570) sufB 1750501..1751916 (-) 1416 WP_238708797.1 Fe-S cluster assembly protein SufB -
  RMP65_RS08575 (RMP65_08575) sufU 1752060..1752500 (-) 441 WP_222759335.1 Fe-S cluster assembly sulfur transfer protein SufU -

Sequence

Protein


Download         Length: 595 a.a.        Molecular weight: 65511.20 Da        Isoelectric Point: 4.4290

>NTDB_id=884948 RMP65_RS08560 WP_313681179.1 1746920..1748707(-) (oppA) [Streptococcus suis strain ID34567]
MKKTTKLFALAGVTLLSASVLAACGSKQSGAAKQELSFPAEVKQDGTAVSDAQLKYAFVSATTSSGLLIDELTENNIDST
FGGFVDISLFGFDGNRKLDDSGLAKAEFDVEGKKITVSLTGKDYKWSDGEPFTINDYIFTIKSMASKDYTGVRFDDKFLN
IEGMKEFVAGTASDISGLKKIDDYTVELTVKEMSPSMMYAGGDVPAYIQPEHIYKDIPVADWEKSEYSRTAKLVGMGPWK
IKEIVNGESITYVPNEYFFKGTTPKTSSLKIDIVSPDTIVSEMKAGNYDIADMPVDQLDSYKDASNLNIVGSLDSAYEYI
SFNFGKYDEAAGKNVMDENAKMNDVKLRQAIAYAIDTKTAGESLYNGLYHPANSMIISFFGDIHDSELEGYSYNPEKAKK
LLDEAGYKDVDGDGIREGKDGKEFKITFAARKRTEANEALVQQYIAWWKEVGLNVELYTGRTVEINTFYEAVQANDPAID
MYAGGWSTGYDPNPTGTWGPIAAFNMSRFVSDENTKLLDAISSTESFDDKKNVENYKAWQKYAHEQAFAIPTFESESITA
LNKRVKNYDSNYGSASGKGIALENIELTADKGVAE

Nucleotide


Download         Length: 1788 bp        

>NTDB_id=884948 RMP65_RS08560 WP_313681179.1 1746920..1748707(-) (oppA) [Streptococcus suis strain ID34567]
ATGAAAAAGACAACGAAACTTTTTGCACTTGCAGGTGTGACTCTCCTTTCAGCATCTGTTCTTGCAGCATGTGGTTCAAA
ACAATCAGGTGCAGCAAAACAGGAATTGTCATTCCCAGCTGAGGTAAAACAAGACGGAACAGCAGTGTCTGACGCACAAT
TGAAATACGCTTTTGTTTCAGCTACAACTTCATCAGGACTTTTGATCGATGAATTGACTGAAAACAATATTGATTCAACA
TTTGGTGGTTTTGTTGATATCTCACTGTTCGGTTTCGATGGAAATCGTAAGTTAGATGATTCAGGTCTTGCTAAAGCTGA
ATTTGATGTAGAAGGTAAGAAAATCACAGTTAGCTTGACAGGTAAGGACTACAAGTGGTCAGATGGTGAGCCATTCACAA
TCAACGACTACATCTTTACTATCAAGTCAATGGCAAGCAAAGACTATACAGGTGTTCGTTTTGATGATAAATTCTTGAAC
ATTGAAGGTATGAAAGAATTCGTTGCTGGAACAGCTTCTGACATCTCTGGTCTTAAGAAAATTGATGACTACACAGTAGA
ATTGACTGTAAAAGAAATGTCACCTTCAATGATGTATGCTGGTGGTGATGTCCCAGCCTATATCCAACCAGAACACATCT
ATAAAGACATCCCTGTTGCAGACTGGGAAAAGAGCGAGTACTCACGTACAGCTAAACTTGTTGGTATGGGACCTTGGAAA
ATCAAGGAAATCGTAAACGGTGAGTCTATCACTTACGTACCAAACGAATACTTCTTCAAAGGTACAACACCAAAAACAAG
TTCATTGAAGATTGACATCGTATCTCCAGATACAATCGTTTCTGAGATGAAAGCTGGTAACTATGACATCGCAGATATGC
CAGTTGATCAGTTGGATTCTTATAAAGATGCATCTAACTTGAATATCGTTGGTTCATTGGATTCAGCTTACGAATACATT
TCATTTAATTTTGGTAAATATGACGAGGCTGCAGGTAAAAACGTCATGGATGAAAATGCTAAGATGAATGATGTGAAACT
TCGTCAAGCGATTGCCTATGCGATTGATACCAAGACAGCTGGCGAGTCATTGTACAATGGTCTTTACCACCCTGCAAACT
CAATGATTATCTCATTCTTCGGCGATATTCATGATTCAGAGTTGGAAGGTTATTCATACAATCCTGAAAAAGCGAAAAAA
CTCTTGGATGAAGCTGGCTACAAAGACGTAGATGGCGATGGAATCCGTGAAGGCAAAGACGGTAAGGAATTCAAGATTAC
CTTTGCTGCTCGTAAACGTACTGAAGCTAACGAAGCGCTTGTACAACAGTACATTGCTTGGTGGAAAGAAGTCGGCTTGA
ACGTTGAATTGTACACAGGCCGTACAGTTGAAATCAATACATTCTACGAAGCTGTTCAAGCAAATGACCCTGCTATCGAC
ATGTACGCTGGTGGTTGGTCAACAGGTTATGATCCAAACCCAACAGGTACTTGGGGTCCTATCGCTGCCTTCAACATGTC
ACGTTTCGTGTCTGACGAAAATACTAAGTTGTTGGACGCAATCAGCTCAACAGAATCATTTGACGATAAGAAAAATGTTG
AGAACTATAAGGCTTGGCAAAAATATGCTCACGAGCAAGCATTTGCCATTCCAACATTTGAGTCTGAGTCAATTACTGCG
CTTAACAAACGCGTGAAAAACTATGATTCAAACTATGGTTCAGCTTCAGGTAAAGGTATCGCTCTTGAAAATATCGAACT
TACAGCTGATAAAGGTGTAGCAGAATAG

Domains

Predicted by InterproScan.

Bacterial extracellular solute-binding proteins, family 5 Middle (SBP_bac_5)

(103-498)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  oppA Streptococcus suis isolate S10

92.411

99.664

0.921