Detailed information    

insolico Bioinformatically predicted

Overview

Name   pptA   Type   Regulator
Locus tag   RMP65_RS08500 Genome accession   NZ_CP135089
Coordinates   1736338..1737072 (-) Length   244 a.a.
NCBI ID   WP_002942356.1    Uniprot ID   G7SIC8
Organism   Streptococcus suis strain ID34567     
Function   export ComS (predicted from homology)   
Competence regulation

Genomic Context

Location: 1731338..1742072
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RMP65_RS08470 (RMP65_08470) rnpM 1731565..1731861 (-) 297 WP_024389460.1 RNase P modulator RnpM -
  RMP65_RS08475 (RMP65_08475) nusA 1731878..1733020 (-) 1143 WP_004194726.1 transcription termination factor NusA -
  RMP65_RS08480 (RMP65_08480) rimP 1733094..1733564 (-) 471 WP_002942369.1 ribosome maturation factor RimP -
  RMP65_RS08485 (RMP65_08485) trmB 1733822..1734460 (-) 639 WP_002939002.1 tRNA (guanosine(46)-N7)-methyltransferase TrmB -
  RMP65_RS08490 (RMP65_08490) ccrZ 1734457..1735251 (-) 795 WP_313681172.1 cell cycle regulator CcrZ -
  RMP65_RS08495 (RMP65_08495) - 1735301..1736341 (-) 1041 WP_313681173.1 ABC transporter permease -
  RMP65_RS08500 (RMP65_08500) pptA 1736338..1737072 (-) 735 WP_002942356.1 ABC transporter ATP-binding protein Regulator
  RMP65_RS08505 (RMP65_08505) - 1737135..1737548 (+) 414 WP_105134828.1 HIT family protein -
  RMP65_RS08510 (RMP65_08510) - 1737550..1737852 (+) 303 WP_024383569.1 hypothetical protein -
  RMP65_RS08515 (RMP65_08515) - 1738322..1739515 (-) 1194 WP_313912498.1 LCP family protein -
  RMP65_RS08520 (RMP65_08520) - 1739512..1740039 (-) 528 WP_002939196.1 GNAT family N-acetyltransferase -
  RMP65_RS08525 (RMP65_08525) tsaE 1740032..1740472 (-) 441 WP_024376437.1 tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex ATPase subunit type 1 TsaE -

Sequence

Protein


Download         Length: 244 a.a.        Molecular weight: 26832.10 Da        Isoelectric Point: 4.3606

>NTDB_id=884947 RMP65_RS08500 WP_002942356.1 1736338..1737072(-) (pptA) [Streptococcus suis strain ID34567]
MLEVKNVTGGYVNIPVLKDVSFTVEDGQLVGLIGLNGAGKSTTIKEIIGLLTPYQGQIAIDGLTLLQGAENYRKKIGFIP
ETPSLYEELTLKEHLEVVAMAYDLSWEQAWGRVEHLLKLFRLDEKLDWFPVNFSKGMKQKVMIICAFMVEPSLLIVDEPF
LGLDPVAISDLIALLEEEKSKGTSILMSTHVLDSAEKMCDSFVILHQGQVRATGNLEELQSAFGMDGASLNEIYLALTQE
GVAG

Nucleotide


Download         Length: 735 bp        

>NTDB_id=884947 RMP65_RS08500 WP_002942356.1 1736338..1737072(-) (pptA) [Streptococcus suis strain ID34567]
ATGTTAGAAGTAAAAAATGTAACTGGAGGGTATGTCAATATCCCGGTTTTGAAAGATGTATCTTTTACGGTTGAGGATGG
TCAATTAGTTGGTCTAATTGGTTTAAATGGTGCAGGGAAATCAACGACTATTAAGGAAATTATCGGTCTTTTGACACCTT
ATCAAGGACAGATTGCAATTGACGGCCTAACTTTGCTACAAGGGGCTGAAAATTATCGGAAGAAGATTGGGTTTATCCCT
GAAACACCAAGTTTGTATGAAGAACTAACCCTCAAAGAGCACTTGGAAGTGGTAGCAATGGCCTATGATTTATCCTGGGA
GCAAGCTTGGGGACGTGTTGAGCACTTGTTAAAACTGTTTCGCTTGGATGAAAAATTGGACTGGTTTCCTGTCAACTTTT
CAAAGGGAATGAAGCAGAAGGTCATGATTATTTGTGCTTTTATGGTGGAGCCGAGTCTGCTGATTGTTGATGAGCCTTTT
CTGGGATTAGACCCTGTGGCTATCTCTGATTTAATCGCTCTTTTGGAGGAAGAAAAATCTAAGGGCACTTCAATCCTCAT
GTCCACTCACGTTCTTGACTCAGCTGAGAAAATGTGCGACTCTTTTGTGATTTTACATCAGGGACAGGTTCGTGCAACTG
GAAATTTGGAGGAGCTACAAAGTGCATTTGGTATGGATGGTGCAAGTCTGAACGAAATTTATCTGGCCTTGACGCAAGAA
GGAGTGGCTGGATGA

Domains

Predicted by InterproScan.

ABC transporter (ABC_tran)

(17-160)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G7SIC8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pptA Streptococcus salivarius strain HSISS4

75.314

97.951

0.738
  pptA Streptococcus thermophilus LMD-9

73.64

97.951

0.721