Detailed information    

insolico Bioinformatically predicted

Overview

Name   oppA   Type   Regulator
Locus tag   RMP67_RS10200 Genome accession   NZ_CP135087
Coordinates   2075251..2077038 (-) Length   595 a.a.
NCBI ID   WP_313920629.1    Uniprot ID   -
Organism   Streptococcus suis strain ID26102     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 2070251..2082038
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RMP67_RS10175 (RMP67_10175) - 2070571..2070936 (-) 366 WP_002939192.1 Asp23/Gls24 family envelope stress response protein -
  RMP67_RS10180 (RMP67_10180) - 2071058..2071960 (-) 903 WP_029171026.1 ABC transporter permease -
  RMP67_RS10185 (RMP67_10185) opp4B 2071974..2072930 (-) 957 WP_024389682.1 oligopeptide ABC transporter permease -
  RMP67_RS10190 (RMP67_10190) - 2072932..2073873 (-) 942 WP_029694475.1 ATP-binding cassette domain-containing protein -
  RMP67_RS10195 (RMP67_10195) - 2073876..2074874 (-) 999 WP_002942324.1 ABC transporter ATP-binding protein -
  RMP67_RS10200 (RMP67_10200) oppA 2075251..2077038 (-) 1788 WP_313920629.1 oligopeptide ABC transporter substrate-binding protein Regulator
  RMP67_RS10205 (RMP67_10205) pbp3 2077251..2078492 (+) 1242 WP_313920631.1 D-alanyl-D-alanine carboxypeptidase PBP3 -
  RMP67_RS10210 (RMP67_10210) sufB 2078627..2080042 (-) 1416 WP_002938151.1 Fe-S cluster assembly protein SufB -
  RMP67_RS10215 (RMP67_10215) sufU 2080444..2080884 (-) 441 WP_313920633.1 Fe-S cluster assembly sulfur transfer protein SufU -

Sequence

Protein


Download         Length: 595 a.a.        Molecular weight: 65660.34 Da        Isoelectric Point: 4.4482

>NTDB_id=884895 RMP67_RS10200 WP_313920629.1 2075251..2077038(-) (oppA) [Streptococcus suis strain ID26102]
MKKTTKLFALAGVTLLSASVLAACGSKQSGAAKQELSFPSEVKQDGTAVSDAQLKYAWVSPTTSSGLLIDELTENTTDST
FGGFVDISLFGFDGNRKLDDSGLAKAEFDVAGKKITVSLTGKDYKWSDGQPFTINDYIFTIKSMASKDYTGVRFDDKFLN
IEGMKEFVAGTASDISGLKKIDDYTVELTVKEMSPSMMYAGGDVPAYIQPEHIYKDIPVADWEKSEYSRTAKLVGMGPWK
IKEIVNGESITYVPNEYYFKGQPKTSSLKVDIVSPDTIVSEMKAGNYDIAEMPVDQLDSYKDASNLNIVGQLDSAYEYIS
FNLGKYDESAEKNVMDENAKMNDVKLRQAIAYAIDTKTAGESLYNGLYHPAKSLIISFFGDIHDSELEGYSYDPEKAKKL
LDEAGYKDVDGDGIREGKDGKEFKITFAARKRTEANEALVQQYIAWWKEVGLNVELYTGRTVETNTFYEAVQANDPAIDM
YAGGWSTGYDPNPTGTWGPIAAFNMSRFVSDENTKLLNAISSTESFDDKKNVENYKAWQKYAYEQAFAIPTFESEKVTAL
NKRVKNYDSNYGSASGNGIAYEGIELTADKGVVAE

Nucleotide


Download         Length: 1788 bp        

>NTDB_id=884895 RMP67_RS10200 WP_313920629.1 2075251..2077038(-) (oppA) [Streptococcus suis strain ID26102]
ATGAAAAAGACAACGAAACTTTTTGCACTTGCAGGTGTGACTCTCCTTTCAGCATCTGTTCTTGCGGCATGTGGTTCAAA
ACAATCAGGTGCAGCAAAACAGGAATTGTCATTCCCATCTGAAGTAAAACAAGACGGAACAGCAGTGTCTGATGCTCAGT
TGAAATACGCATGGGTATCACCAACAACTTCATCAGGTCTCTTGATTGACGAGTTGACTGAAAATACAACTGACTCAACA
TTTGGTGGTTTTGTTGATATCTCACTGTTCGGTTTCGATGGAAATCGTAAGTTAGATGATTCAGGTCTTGCTAAAGCTGA
ATTTGATGTAGCAGGTAAGAAAATCACAGTTAGCTTGACAGGTAAGGACTACAAGTGGTCAGATGGTCAACCATTCACAA
TCAACGACTACATCTTTACTATCAAGTCAATGGCAAGCAAAGACTATACAGGTGTTCGTTTTGATGATAAATTCTTGAAC
ATTGAAGGTATGAAAGAATTCGTTGCTGGAACAGCTTCTGACATCTCTGGTCTTAAGAAAATTGATGACTACACAGTAGA
ATTGACTGTAAAAGAAATGTCACCTTCTATGATGTATGCGGGTGGTGATGTCCCAGCCTATATCCAACCAGAACATATCT
ATAAAGATATCCCTGTTGCAGACTGGGAAAAGAGCGAGTACTCACGTACAGCTAAACTTGTTGGTATGGGACCTTGGAAA
ATCAAGGAAATCGTAAACGGTGAGTCTATCACTTACGTACCAAACGAATACTATTTCAAGGGACAACCAAAAACAAGCTC
ATTGAAGGTTGATATTGTATCTCCTGATACAATCGTTTCTGAGATGAAAGCTGGTAACTATGACATTGCTGAGATGCCTG
TTGACCAGTTGGATTCATATAAGGACGCTTCTAACTTGAATATCGTTGGTCAGTTAGACTCAGCTTATGAATATATCTCA
TTCAACCTTGGTAAATATGACGAGTCTGCTGAGAAGAACGTCATGGATGAAAATGCTAAGATGAATGATGTGAAACTTCG
TCAAGCAATTGCCTATGCAATTGATACCAAGACAGCTGGTGAGTCATTGTACAATGGTCTTTACCACCCTGCAAAATCAT
TGATTATCTCATTCTTCGGCGATATTCATGATTCAGAGTTGGAAGGTTATTCATACGATCCTGAAAAAGCGAAAAAACTC
TTGGATGAAGCTGGCTACAAAGACGTAGATGGCGATGGTATCCGTGAAGGTAAAGACGGTAAGGAATTCAAGATTACCTT
TGCTGCTCGTAAACGTACGGAAGCTAACGAAGCACTTGTACAACAGTACATTGCTTGGTGGAAAGAAGTTGGCTTGAACG
TTGAACTTTACACAGGCCGTACAGTTGAAACCAATACATTCTACGAAGCTGTTCAAGCAAATGATCCTGCTATTGATATG
TACGCTGGTGGTTGGTCTACAGGTTACGATCCAAACCCAACTGGTACTTGGGGTCCTATCGCTGCCTTCAACATGTCACG
TTTCGTGTCTGATGAAAACACTAAATTGTTGAATGCAATCAGCTCAACAGAATCATTTGATGATAAGAAAAATGTTGAGA
ACTATAAGGCTTGGCAAAAATATGCTTACGAACAAGCATTTGCTATTCCTACATTTGAATCTGAAAAGGTTACAGCACTT
AACAAACGTGTGAAAAACTATGATTCTAACTATGGTTCAGCTTCAGGAAACGGTATTGCTTATGAGGGTATCGAACTTAC
AGCTGATAAAGGTGTAGTAGCAGAATAG

Domains

Predicted by InterproScan.

Bacterial extracellular solute-binding proteins, family 5 Middle (SBP_bac_5)

(109-497)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  oppA Streptococcus suis isolate S10

92.45

100

0.926