Detailed information    

insolico Bioinformatically predicted

Overview

Name   pptA   Type   Regulator
Locus tag   RMP67_RS10140 Genome accession   NZ_CP135087
Coordinates   2065030..2065764 (-) Length   244 a.a.
NCBI ID   WP_313920617.1    Uniprot ID   -
Organism   Streptococcus suis strain ID26102     
Function   export ComS (predicted from homology)   
Competence regulation

Genomic Context

Location: 2060030..2070764
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RMP67_RS10115 (RMP67_10115) nusA 2060257..2061399 (-) 1143 WP_004194726.1 transcription termination factor NusA -
  RMP67_RS10120 (RMP67_10120) rimP 2061473..2061943 (-) 471 WP_002942369.1 ribosome maturation factor RimP -
  RMP67_RS10125 (RMP67_10125) trmB 2062514..2063152 (-) 639 WP_002939002.1 tRNA (guanosine(46)-N7)-methyltransferase TrmB -
  RMP67_RS10130 (RMP67_10130) ccrZ 2063149..2063943 (-) 795 WP_002942360.1 cell cycle regulator CcrZ -
  RMP67_RS10135 (RMP67_10135) - 2063993..2065033 (-) 1041 WP_313920615.1 ABC transporter permease -
  RMP67_RS10140 (RMP67_10140) pptA 2065030..2065764 (-) 735 WP_313920617.1 ABC transporter ATP-binding protein Regulator
  RMP67_RS10145 (RMP67_10145) - 2065827..2066240 (+) 414 WP_044682345.1 HIT family protein -
  RMP67_RS10150 (RMP67_10150) - 2066242..2066544 (+) 303 WP_029172813.1 hypothetical protein -
  RMP67_RS10155 (RMP67_10155) - 2066653..2067846 (-) 1194 WP_024387521.1 LCP family protein -
  RMP67_RS10160 (RMP67_10160) - 2067843..2068370 (-) 528 WP_012775687.1 GNAT family N-acetyltransferase -
  RMP67_RS10165 (RMP67_10165) tsaE 2068363..2068803 (-) 441 WP_012775330.1 tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex ATPase subunit type 1 TsaE -
  RMP67_RS10170 (RMP67_10170) - 2068904..2070568 (-) 1665 WP_313920624.1 DAK2 domain-containing protein -

Sequence

Protein


Download         Length: 244 a.a.        Molecular weight: 26774.07 Da        Isoelectric Point: 4.3999

>NTDB_id=884894 RMP67_RS10140 WP_313920617.1 2065030..2065764(-) (pptA) [Streptococcus suis strain ID26102]
MLEVKNVTGGYVNIPVLKDVSFTVEDGQLVGLIGLNGAGKSTTIKEIIGLLTPYQGQIAIDGLTLLQGAENYRKKIGFIP
ETPSLYEELTLKEHLEVVAMAYDLSWEQAWGRVEHLLKLFRLDEKLDWFPVNFSKGMKQKVMIICAFMVEPSLLIVDEPF
LGLDPVAISDLIALLAEEKSKGTSILMSTHVLDSAEKMCDSFVILHQGQVRATGNLEELQSAFGMDGASLNEIYLALTQE
GVAG

Nucleotide


Download         Length: 735 bp        

>NTDB_id=884894 RMP67_RS10140 WP_313920617.1 2065030..2065764(-) (pptA) [Streptococcus suis strain ID26102]
ATGTTAGAAGTAAAAAATGTAACTGGAGGATATGTCAATATCCCAGTTTTGAAAGATGTATCTTTTACTGTTGAGGATGG
TCAATTAGTTGGTCTAATTGGTTTAAATGGTGCAGGGAAATCAACGACTATTAAGGAAATTATCGGTCTTTTGACCCCCT
ATCAAGGACAGATTGCAATTGACGGCCTAACTTTGCTACAAGGGGCTGAAAATTATCGGAAGAAGATTGGGTTTATCCCT
GAAACACCAAGTTTGTATGAAGAACTAACCCTCAAAGAGCACTTGGAAGTGGTAGCAATGGCCTATGATTTATCCTGGGA
GCAAGCTTGGGGACGTGTTGAGCACTTGTTAAAACTGTTTCGCTTGGATGAGAAATTGGACTGGTTTCCTGTCAATTTTT
CAAAGGGAATGAAGCAGAAGGTCATGATTATTTGTGCTTTTATGGTGGAGCCGAGTCTATTGATTGTTGATGAGCCTTTT
CTGGGATTAGACCCTGTGGCTATCTCTGACTTGATCGCTCTTTTGGCGGAAGAAAAATCTAAGGGCACTTCAATCCTCAT
GTCCACTCACGTTCTTGACTCAGCTGAGAAAATGTGCGACTCTTTTGTGATTTTACATCAGGGACAGGTTCGTGCAACTG
GAAATTTGGAGGAGCTACAAAGCGCATTTGGTATGGATGGTGCAAGTCTGAATGAAATTTATCTGGCCTTGACGCAAGAA
GGAGTGGCTGGATGA

Domains

Predicted by InterproScan.

ABC transporter (ABC_tran)

(17-160)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pptA Streptococcus salivarius strain HSISS4

75.732

97.951

0.742
  pptA Streptococcus thermophilus LMD-9

74.059

97.951

0.725