Detailed information    

insolico Bioinformatically predicted

Overview

Name   sepM   Type   Regulator
Locus tag   RMP67_RS09315 Genome accession   NZ_CP135087
Coordinates   1899833..1900882 (-) Length   349 a.a.
NCBI ID   WP_014638484.1    Uniprot ID   -
Organism   Streptococcus suis strain ID26102     
Function   processing of CSP (predicted from homology)   
Competence regulation

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
ICE 1892525..1918701 1899833..1900882 within 0


Gene organization within MGE regions


Location: 1892525..1918701
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RMP67_RS09285 (RMP67_09285) - 1893025..1894485 (+) 1461 WP_024382383.1 nicotinate phosphoribosyltransferase -
  RMP67_RS09290 (RMP67_09290) nadE 1894498..1895322 (+) 825 WP_313920420.1 ammonia-dependent NAD(+) synthetase -
  RMP67_RS09295 (RMP67_09295) trpB 1895364..1896539 (-) 1176 WP_313920422.1 tryptophan synthase subunit beta -
  RMP67_RS09300 (RMP67_09300) - 1897359..1897886 (-) 528 WP_002942846.1 VanZ family protein -
  RMP67_RS09305 (RMP67_09305) rlmN 1897883..1898995 (-) 1113 WP_313920424.1 23S rRNA (adenine(2503)-C(2))-methyltransferase RlmN -
  RMP67_RS09310 (RMP67_09310) - 1899004..1899645 (-) 642 WP_014638483.1 YutD-like domain-containing protein -
  RMP67_RS09315 (RMP67_09315) sepM 1899833..1900882 (-) 1050 WP_014638484.1 SepM family pheromone-processing serine protease Regulator
  RMP67_RS09320 (RMP67_09320) coaD 1900869..1901357 (-) 489 WP_002939048.1 pantetheine-phosphate adenylyltransferase -
  RMP67_RS09325 (RMP67_09325) rsmD 1901347..1901886 (-) 540 WP_014638485.1 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD -
  RMP67_RS09330 (RMP67_09330) - 1902185..1902907 (-) 723 WP_313920427.1 serine protease -
  RMP67_RS09335 (RMP67_09335) - 1902964..1903350 (-) 387 WP_004194735.1 rhodanese-like domain-containing protein -
  RMP67_RS09340 (RMP67_09340) - 1903350..1903568 (-) 219 WP_004194736.1 YqgQ family protein -
  RMP67_RS09345 (RMP67_09345) - 1903628..1904227 (-) 600 WP_313920429.1 response regulator transcription factor -
  RMP67_RS09350 (RMP67_09350) - 1904224..1905318 (-) 1095 WP_313920431.1 histidine kinase -
  RMP67_RS09355 (RMP67_09355) - 1905330..1906058 (-) 729 WP_313920434.1 ABC transporter permease -
  RMP67_RS09360 (RMP67_09360) - 1906055..1906933 (-) 879 WP_205026074.1 ABC transporter ATP-binding protein -
  RMP67_RS09365 (RMP67_09365) - 1907084..1907602 (-) 519 WP_313920436.1 Dps family protein -
  RMP67_RS09370 (RMP67_09370) - 1907807..1908019 (+) 213 WP_002942806.1 CsbD family protein -
  RMP67_RS09375 (RMP67_09375) - 1908189..1908623 (+) 435 WP_313920439.1 low molecular weight protein-tyrosine-phosphatase -
  RMP67_RS09380 (RMP67_09380) - 1908755..1909177 (+) 423 WP_029176244.1 membrane protein -
  RMP67_RS09385 (RMP67_09385) - 1909167..1910966 (+) 1800 WP_313920442.1 acyltransferase family protein -
  RMP67_RS09390 (RMP67_09390) - 1911190..1911843 (-) 654 WP_313920443.1 phosphatase PAP2 family protein -
  RMP67_RS09395 (RMP67_09395) - 1911868..1912425 (-) 558 WP_009910581.1 ECF transporter S component -
  RMP67_RS09400 (RMP67_09400) - 1912749..1913294 (-) 546 WP_014736238.1 tRNA (cytidine(34)-2'-O)-methyltransferase -
  RMP67_RS09405 (RMP67_09405) yidD 1913861..1914100 (-) 240 WP_014638497.1 membrane protein insertion efficiency factor YidD -
  RMP67_RS09410 (RMP67_09410) - 1914100..1914831 (-) 732 WP_024375836.1 pseudouridine synthase -
  RMP67_RS09415 (RMP67_09415) scpB 1914821..1915390 (-) 570 WP_002939233.1 SMC-Scp complex subunit ScpB -
  RMP67_RS09420 (RMP67_09420) - 1915374..1916093 (-) 720 WP_313920446.1 segregation/condensation protein A -
  RMP67_RS09425 (RMP67_09425) xerD 1916093..1916824 (-) 732 WP_313920448.1 site-specific tyrosine recombinase XerD -
  RMP67_RS09430 (RMP67_09430) cbpB 1916821..1917279 (-) 459 WP_012027618.1 cyclic-di-AMP-binding protein CbpB -
  RMP67_RS09435 (RMP67_09435) - 1917276..1917803 (-) 528 WP_313920450.1 metallophosphoesterase -

Sequence

Protein


Download         Length: 349 a.a.        Molecular weight: 37719.70 Da        Isoelectric Point: 4.4261

>NTDB_id=884891 RMP67_RS09315 WP_014638484.1 1899833..1900882(-) (sepM) [Streptococcus suis strain ID26102]
MKKNRKLTLIASIVLGTLLIWFAVFVRLPYYLESPGGAADIRQVLTVNNQIDQEDGSYNFTYVSVQQATALQLFAAQFDP
YTTVRSSEEMTGGADNEEYFRIAQFYMETSQNMAKYQGLTLAGKEVNLDFFGVYVLALADDSTFKKVLNIADTVVSINGK
TFESSPDLIKYVSGLELGSDVTVGYISAGQEKSADGKIIKLSNGKNGIGITLVDHTEVQSSIPIDFQTGDIGGPSAGLMF
TLAIYTQLAEPDLRDGRIIAGTGTIEQDGKVGDIGGADKKVISAAKSGASIFFVPNNPVDVEVLKEDPKAKTNYEEAKEA
AEKAGLDIEVVPVKTVQEAIDYLKKTKGE

Nucleotide


Download         Length: 1050 bp        

>NTDB_id=884891 RMP67_RS09315 WP_014638484.1 1899833..1900882(-) (sepM) [Streptococcus suis strain ID26102]
ATGAAGAAAAATAGGAAGTTAACCTTAATTGCATCTATTGTTTTAGGAACTCTTTTGATTTGGTTTGCCGTTTTTGTTCG
TCTGCCTTATTATTTGGAAAGTCCAGGTGGAGCTGCCGATATTCGTCAGGTACTAACGGTGAACAATCAAATAGACCAAG
AGGATGGCTCTTACAACTTTACCTATGTATCAGTCCAACAAGCTACAGCTTTACAATTATTCGCTGCTCAGTTTGATCCC
TATACGACAGTTCGTTCCTCTGAAGAGATGACAGGAGGGGCCGACAATGAAGAGTATTTCCGTATAGCACAGTTTTACAT
GGAGACATCGCAAAATATGGCGAAGTACCAAGGTTTGACCTTGGCAGGAAAAGAAGTCAATCTTGATTTCTTTGGTGTCT
ATGTACTTGCCTTGGCGGATGATTCGACCTTTAAAAAAGTTCTTAATATTGCCGACACTGTTGTGAGTATCAATGGAAAA
ACATTTGAGTCTTCTCCTGATTTGATTAAATATGTGAGTGGCTTGGAACTTGGAAGTGATGTGACAGTTGGTTATATTAG
CGCTGGACAGGAAAAATCTGCGGACGGTAAGATTATCAAATTGTCTAATGGCAAAAACGGGATAGGCATCACTCTCGTAG
ATCATACAGAGGTTCAAAGTTCGATTCCGATTGATTTCCAAACGGGAGATATTGGTGGTCCAAGTGCTGGTCTGATGTTT
ACACTTGCCATCTATACTCAACTCGCAGAGCCTGACTTACGTGATGGTCGAATTATTGCTGGTACGGGGACTATCGAGCA
GGATGGAAAAGTAGGTGACATTGGTGGGGCTGATAAGAAGGTTATTTCAGCAGCTAAGTCAGGTGCAAGTATCTTTTTCG
TACCAAATAATCCAGTTGATGTGGAAGTTTTGAAGGAAGATCCAAAGGCTAAAACCAACTATGAGGAAGCTAAAGAAGCT
GCGGAGAAAGCAGGGTTGGATATTGAGGTAGTTCCTGTGAAAACTGTTCAAGAGGCTATTGATTATTTGAAGAAAACAAA
GGGCGAGTAA

Domains

Predicted by InterproScan.

PDZ domain (PDZ_2)

(132-195)

Lon protease (S16) C-terminal proteolytic domain (Lon_C)

(232-311)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sepM Streptococcus mutans UA159

60.807

99.427

0.605