Detailed information    

insolico Bioinformatically predicted

Overview

Name   vicX   Type   Regulator
Locus tag   RMP67_RS08350 Genome accession   NZ_CP135087
Coordinates   1694743..1695546 (-) Length   267 a.a.
NCBI ID   WP_002935843.1    Uniprot ID   -
Organism   Streptococcus suis strain ID26102     
Function   require for competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 1689743..1700546
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RMP67_RS08320 (RMP67_08320) pbp2b 1689843..1691918 (-) 2076 WP_313919727.1 penicillin-binding protein PBP2B -
  RMP67_RS08325 (RMP67_08325) - 1692010..1692153 (-) 144 WP_313919729.1 hypothetical protein -
  RMP67_RS08335 (RMP67_08335) - 1692420..1693061 (-) 642 WP_029749608.1 hypothetical protein -
  RMP67_RS08340 (RMP67_08340) - 1693138..1693437 (-) 300 WP_313919733.1 hypothetical protein -
  RMP67_RS08345 (RMP67_08345) - 1693743..1694384 (-) 642 WP_313919736.1 ATP-binding cassette domain-containing protein -
  RMP67_RS08350 (RMP67_08350) vicX 1694743..1695546 (-) 804 WP_002935843.1 MBL fold metallo-hydrolase Regulator
  RMP67_RS08355 (RMP67_08355) micB 1695553..1696902 (-) 1350 WP_044761697.1 cell wall metabolism sensor histidine kinase VicK Regulator
  RMP67_RS08360 (RMP67_08360) micA 1696895..1697599 (-) 705 WP_004298854.1 response regulator YycF Regulator
  RMP67_RS08365 (RMP67_08365) - 1697793..1698554 (+) 762 WP_313919738.1 amino acid ABC transporter ATP-binding protein -
  RMP67_RS08370 (RMP67_08370) - 1698565..1699404 (+) 840 WP_313919740.1 transporter substrate-binding domain-containing protein -
  RMP67_RS08375 (RMP67_08375) - 1699419..1700117 (+) 699 WP_313919742.1 amino acid ABC transporter permease -

Sequence

Protein


Download         Length: 267 a.a.        Molecular weight: 29659.75 Da        Isoelectric Point: 5.7755

>NTDB_id=884885 RMP67_RS08350 WP_002935843.1 1694743..1695546(-) (vicX) [Streptococcus suis strain ID26102]
MIGKGFNYSILASGSSGNCFYLETDKKKILVDAGLSGKKITSLLAEIDRKPEDIDAILVTHEHSDHIHGIGVLARKYGMD
IYANELTWQAMESKLGKIDVAQKHIFELGAMKTFGDLDIESFGVSHDAACPQFYRFMKDDKSFVMLTDTGYVSDRMVGIV
ENADAYLIESNHDIEILRSGSYSWNLKQRILSDKGHLCNEDGADAMIRSLGNRTKKIYLGHLSKENNIKELAHMTMVNQL
AQADLGVGVDFQVYDTSPDTATPLTKI

Nucleotide


Download         Length: 804 bp        

>NTDB_id=884885 RMP67_RS08350 WP_002935843.1 1694743..1695546(-) (vicX) [Streptococcus suis strain ID26102]
ATGATCGGAAAAGGTTTTAATTATAGTATTTTAGCTTCAGGGTCCAGCGGGAATTGTTTTTACCTAGAAACAGATAAAAA
GAAAATCTTAGTGGATGCTGGCTTATCAGGGAAAAAGATTACCAGTCTTTTGGCGGAAATTGATCGAAAGCCTGAGGATA
TTGATGCTATCCTGGTAACGCATGAACATAGCGATCACATCCATGGTATCGGTGTTTTAGCACGTAAGTATGGCATGGAC
ATTTATGCCAATGAATTGACCTGGCAGGCTATGGAGAGCAAATTGGGCAAGATTGATGTGGCTCAAAAACATATCTTCGA
ATTGGGTGCTATGAAGACTTTTGGCGACCTAGATATTGAGTCCTTTGGAGTTAGCCATGATGCTGCATGTCCGCAATTTT
ACCGTTTTATGAAGGATGACAAATCCTTTGTTATGTTGACGGATACAGGCTATGTCAGTGACCGCATGGTTGGAATTGTA
GAAAATGCCGATGCTTATTTGATTGAATCCAACCATGATATTGAAATTTTGCGCTCGGGTTCTTACTCTTGGAATCTCAA
ACAACGGATTCTATCCGATAAGGGACATCTTTGTAACGAAGATGGAGCTGATGCCATGATTCGCTCGTTGGGAAATCGGA
CCAAAAAGATTTACCTAGGGCATTTGTCAAAGGAAAACAATATCAAGGAATTGGCTCACATGACCATGGTTAATCAGTTG
GCGCAGGCTGATTTAGGAGTTGGAGTGGATTTCCAAGTCTATGATACATCGCCAGATACGGCGACTCCCTTGACCAAGAT
TTGA

Domains

Predicted by InterproScan.

Metallo-beta-lactamase superfamily (Lactamase_B)

(15-160)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vicX Streptococcus mutans UA159

77.154

100

0.772