Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilN   Type   Machinery gene
Locus tag   OCUAc17_RS01580 Genome accession   NZ_AP024798
Coordinates   334729..335370 (+) Length   213 a.a.
NCBI ID   WP_005804530.1    Uniprot ID   -
Organism   Acinetobacter pittii strain OCU Ac17     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 329729..340370
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OCUAc17_RS01560 (OCUAc17_02970) - 329732..330064 (+) 333 WP_005804527.1 hypothetical protein -
  OCUAc17_RS01565 (OCUAc17_02980) rrmA 330067..330891 (+) 825 WP_005078486.1 putative RNA methyltransferase -
  OCUAc17_RS01570 (OCUAc17_02990) ponA 330948..333509 (-) 2562 WP_005804528.1 penicillin-binding protein PBP1a -
  OCUAc17_RS01575 (OCUAc17_03000) pilM 333671..334729 (+) 1059 WP_005067078.1 pilus assembly protein PilM Machinery gene
  OCUAc17_RS01580 (OCUAc17_03010) pilN 334729..335370 (+) 642 WP_005804530.1 PilN domain-containing protein Machinery gene
  OCUAc17_RS01585 (OCUAc17_03020) pilO 335367..336146 (+) 780 WP_005804531.1 type 4a pilus biogenesis protein PilO Machinery gene
  OCUAc17_RS01590 (OCUAc17_03030) pilP 336158..336685 (+) 528 WP_005804532.1 pilus assembly protein PilP Machinery gene
  OCUAc17_RS01595 (OCUAc17_03040) pilQ 336748..338913 (+) 2166 WP_002116833.1 type IV pilus secretin PilQ Machinery gene
  OCUAc17_RS01600 (OCUAc17_03050) aroK 338925..339494 (+) 570 WP_002116987.1 shikimate kinase AroK -

Sequence

Protein


Download         Length: 213 a.a.        Molecular weight: 23963.44 Da        Isoelectric Point: 5.4186

>NTDB_id=88487 OCUAc17_RS01580 WP_005804530.1 334729..335370(+) (pilN) [Acinetobacter pittii strain OCU Ac17]
MATINLLPWRDGLREQRKKQFIILCFGVVILGITTVFAGWFYLNQKLNDQEQANQLIISTNQNLDQQLKTLNGLQEQRDA
IIERMKLIQGLQSQRPVVVRLVDELVRVTPAAMYLTKFSRTGDKFTIEGKAESPNTVAELLRNLEASPWYRNAFMSSFLA
TEEKKDKAVSSLLPRVEDSYGSFVVTVDVGEMGVTTTDDTANTSIGTDKEVAK

Nucleotide


Download         Length: 642 bp        

>NTDB_id=88487 OCUAc17_RS01580 WP_005804530.1 334729..335370(+) (pilN) [Acinetobacter pittii strain OCU Ac17]
ATGGCAACAATTAATTTACTCCCTTGGCGTGATGGGCTTAGGGAGCAGCGTAAAAAACAATTTATTATTTTATGTTTTGG
GGTCGTTATTTTGGGGATAACCACTGTATTTGCAGGGTGGTTTTATTTGAATCAAAAATTAAATGATCAAGAACAAGCAA
ATCAGCTCATCATCAGTACAAACCAGAATCTAGATCAACAACTTAAAACCTTAAATGGCTTGCAAGAACAGCGGGACGCA
ATTATTGAGCGTATGAAGCTCATTCAAGGTTTGCAAAGCCAGCGTCCGGTCGTTGTACGTTTGGTGGATGAATTAGTACG
TGTGACCCCGGCAGCCATGTATTTGACTAAATTCAGTCGAACCGGAGATAAATTTACGATTGAAGGTAAAGCGGAAAGTC
CAAATACAGTTGCAGAGTTATTACGTAATCTCGAAGCATCGCCATGGTATCGCAACGCTTTTATGAGTTCTTTCTTGGCG
ACCGAAGAGAAAAAAGATAAGGCTGTCAGTTCTTTGCTTCCTAGAGTTGAAGATAGCTATGGCAGTTTTGTTGTTACTGT
TGATGTAGGGGAAATGGGGGTGACTACAACAGATGATACCGCCAATACGTCTATAGGTACGGATAAGGAGGTGGCAAAAT
GA

Domains

Predicted by InterproScan.

Fimbrial assembly protein (PilN) (PilN)

(100-168)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilN Acinetobacter baumannii D1279779

88.263

100

0.883
  comN Acinetobacter baylyi ADP1

71.569

95.775

0.685

Multiple sequence alignment