Detailed information    

insolico Bioinformatically predicted

Overview

Name   treR   Type   Regulator
Locus tag   RMP67_RS01290 Genome accession   NZ_CP135087
Coordinates   249097..249810 (+) Length   237 a.a.
NCBI ID   WP_313921434.1    Uniprot ID   -
Organism   Streptococcus suis strain ID26102     
Function   regulate expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 244097..254810
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RMP67_RS01280 (RMP67_01280) treC 245108..246733 (-) 1626 WP_313920945.1 alpha,alpha-phosphotrehalase -
  RMP67_RS01285 (RMP67_01285) treP 246894..248757 (-) 1864 Protein_220 PTS system trehalose-specific EIIBC component -
  RMP67_RS01290 (RMP67_01290) treR 249097..249810 (+) 714 WP_313921434.1 trehalose operon repressor Regulator
  RMP67_RS01295 (RMP67_01295) - 249868..250179 (+) 312 WP_029180113.1 hypothetical protein -
  RMP67_RS01300 (RMP67_01300) - 250176..250724 (+) 549 WP_313920947.1 CvpA family protein -
  RMP67_RS01305 (RMP67_01305) - 251218..253551 (+) 2334 WP_313920948.1 endonuclease MutS2 -
  RMP67_RS01310 (RMP67_01310) - 253575..254228 (+) 654 WP_172079029.1 GNAT family N-acetyltransferase -

Sequence

Protein


Download         Length: 237 a.a.        Molecular weight: 27335.27 Da        Isoelectric Point: 7.3098

>NTDB_id=884867 RMP67_RS01290 WP_313921434.1 249097..249810(+) (treR) [Streptococcus suis strain ID26102]
MKKYQEIYNDLKEKIRTNIYPAERSLPTEQQLQEMYGVSRDTVRKSLAMLTEGGLIQKVQGRGSMVLKQEILNFPVSGLT
SYQELTNVLQLSTKTDVVSLDMITVNSSLSHLTGFEPYSKVWKVVRTRSIDGKVSVVDTDYLAVDVVPELTTAIAEKSIY
EYLENKLGLDIAYAQKEITVEPTNREERELMQSKDDYLVLIKSRVYLGDTQQFQYTESKHKIDKFRFVDFARRKHSL

Nucleotide


Download         Length: 714 bp        

>NTDB_id=884867 RMP67_RS01290 WP_313921434.1 249097..249810(+) (treR) [Streptococcus suis strain ID26102]
ATGAAAAAATACCAAGAAATCTATAATGATTTGAAAGAGAAAATCCGTACAAATATTTATCCGGCAGAAAGGTCTTTGCC
TACAGAACAACAATTACAGGAAATGTATGGAGTTAGTCGGGATACTGTTCGCAAATCTTTAGCTATGCTGACAGAGGGCG
GTCTCATCCAGAAGGTTCAAGGTCGTGGTTCAATGGTCCTTAAGCAAGAAATTCTCAATTTCCCAGTTTCAGGTTTAACT
TCCTACCAGGAATTGACAAATGTTCTCCAGCTTTCTACCAAGACAGATGTTGTCAGCTTAGATATGATTACCGTTAATAG
TAGCCTTTCGCATTTGACAGGCTTTGAGCCGTATAGCAAGGTGTGGAAAGTTGTCCGTACACGTTCGATTGACGGTAAGG
TCTCTGTTGTGGATACAGATTATCTTGCTGTCGATGTCGTGCCAGAGTTGACAACTGCTATTGCTGAAAAATCCATATAC
GAATACCTAGAAAATAAGTTAGGCCTTGATATTGCTTATGCACAAAAAGAGATTACGGTAGAGCCGACCAATCGAGAAGA
GCGTGAGCTAATGCAATCGAAGGATGATTATTTGGTCTTGATTAAATCTCGTGTCTATCTCGGTGATACCCAGCAATTCC
AATATACAGAAAGCAAGCATAAAATTGATAAATTCCGCTTTGTAGATTTTGCTCGTAGAAAGCATTCTTTATAG

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, gntR family (GntR)

(3-66)

UTRA domain (UTRA)

(91-226)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  treR Streptococcus mutans UA159

51.709

98.734

0.511